Variant report

Variant	rs34469130
Chromosome Location	chr5:116609585-116609586
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs10035146	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10037418	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10066055	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10079309	0.88[EUR][1000 genomes]
rs10080021	0.90[EUR][1000 genomes]
rs10085046	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10463690	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10478339	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11957082	0.90[EUR][1000 genomes]
rs12652528	0.86[EUR][1000 genomes]
rs13170803	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13184380	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1353285	0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1389934	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1389935	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1494818	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1494820	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1494821	0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1494823	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1565889	0.87[EUR][1000 genomes]
rs1565890	0.86[EUR][1000 genomes]
rs1908408	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1908409	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1976282	0.88[EUR][1000 genomes]
rs2036024	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2220858	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2900101	0.88[EUR][1000 genomes]
rs35793287	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4331937	0.86[EUR][1000 genomes]
rs4435900	0.88[EUR][1000 genomes]
rs4642406	0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs55813945	0.90[EUR][1000 genomes]
rs56020309	0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs60269947	0.91[EUR][1000 genomes]
rs6595020	0.90[EUR][1000 genomes]
rs6595026	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6595028	0.82[EUR][1000 genomes]
rs6862441	0.90[EUR][1000 genomes]
rs7702997	0.90[EUR][1000 genomes]
rs7703434	0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7710974	0.81[EUR][1000 genomes]
rs7712165	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7714476	0.90[EUR][1000 genomes]
rs7729749	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7730432	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7732328	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7736463	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1015741	chr5:116525936-116665270	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv599486	chr5:116607979-116669707	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:116606600-116610000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr5:116608400-116609600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr5:116609400-116609600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr5:116609400-116609800	Enhancers	Stomach Mucosa	stomach

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