Variant report

Variant	rs34474714
Chromosome Location	chr3:23536891-23536892
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:23535866..23538759-chr3:23551729..23554341,2	MCF-7	breast:

Extended variants
information (count: 99 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:96)

rs_ID	r²[population]
rs13059155	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs13063451	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs13065375	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs13065646	0.87[EUR][1000 genomes]
rs13066741	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs13070136	1.00[EUR][1000 genomes]
rs13071171	1.00[EUR][1000 genomes]
rs13072325	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13073761	0.94[EUR][1000 genomes]
rs13076412	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs13076527	0.94[EUR][1000 genomes]
rs13082311	0.98[EUR][1000 genomes]
rs13084870	0.98[EUR][1000 genomes]
rs13085173	0.95[EUR][1000 genomes]
rs13085266	0.94[EUR][1000 genomes]
rs13087238	0.90[EUR][1000 genomes]
rs13088756	0.98[EUR][1000 genomes]
rs13090125	0.98[EUR][1000 genomes]
rs13090335	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs13091625	0.98[EUR][1000 genomes]
rs13091634	0.98[EUR][1000 genomes]
rs13092830	0.86[EUR][1000 genomes]
rs13095737	0.98[EUR][1000 genomes]
rs13096187	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs13098798	0.82[EUR][1000 genomes]
rs13100499	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs34134134	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs34171096	0.98[EUR][1000 genomes]
rs34225647	0.94[EUR][1000 genomes]
rs34322396	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs34443476	0.86[EUR][1000 genomes]
rs34504120	0.85[EUR][1000 genomes]
rs34619482	0.94[EUR][1000 genomes]
rs34732257	0.94[EUR][1000 genomes]
rs34743949	0.88[EUR][1000 genomes]
rs34758087	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs34804976	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs34827773	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs34882744	0.98[EUR][1000 genomes]
rs34894979	0.98[EUR][1000 genomes]
rs34916096	0.97[EUR][1000 genomes]
rs34916962	0.98[EUR][1000 genomes]
rs34928966	0.97[EUR][1000 genomes]
rs34970845	0.88[EUR][1000 genomes]
rs35021696	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs35027557	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35028631	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs35055753	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs35105861	0.98[EUR][1000 genomes]
rs35121170	0.98[EUR][1000 genomes]
rs35152860	1.00[EUR][1000 genomes]
rs35156003	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs35177750	0.98[EUR][1000 genomes]
rs35179250	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs35190363	0.94[EUR][1000 genomes]
rs35209889	0.98[EUR][1000 genomes]
rs35218978	0.97[EUR][1000 genomes]
rs35230557	0.94[EUR][1000 genomes]
rs35245309	0.97[EUR][1000 genomes]
rs35273607	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs35314441	0.97[EUR][1000 genomes]
rs35347265	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs35383024	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs35402533	0.88[EUR][1000 genomes]
rs35408638	0.97[EUR][1000 genomes]
rs35497505	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs35649850	0.97[EUR][1000 genomes]
rs35657558	0.87[EUR][1000 genomes]
rs35778452	0.98[EUR][1000 genomes]
rs35869522	0.88[EUR][1000 genomes]
rs35902312	0.94[EUR][1000 genomes]
rs35907941	0.94[EUR][1000 genomes]
rs35928592	0.94[EUR][1000 genomes]
rs35975795	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs36021750	0.98[EUR][1000 genomes]
rs36082634	1.00[EUR][1000 genomes]
rs36124326	0.97[EUR][1000 genomes]
rs36183485	0.82[EUR][1000 genomes]
rs58522464	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs60074421	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs71322171	0.88[EUR][1000 genomes]
rs71322172	0.97[EUR][1000 genomes]
rs71322173	0.94[EUR][1000 genomes]
rs71322174	0.97[EUR][1000 genomes]
rs71322183	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs71322184	0.97[EUR][1000 genomes]
rs71322185	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs71322187	0.98[EUR][1000 genomes]
rs71322189	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs71322190	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs71322195	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71322200	0.92[EUR][1000 genomes]
rs71322201	0.98[EUR][1000 genomes]
rs71322202	0.98[EUR][1000 genomes]
rs71324103	0.86[EUR][1000 genomes]
rs71324104	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1002823	chr3:23277838-23623083	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1007373	chr3:23367952-23710331	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Genic enhancers Strong transcription Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv533980	chr3:23445901-24311972	ZNF genes & repeats Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:23523600-23542400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr3:23526600-23554000	Weak transcription	Primary T cells from cord blood	blood
3	chr3:23528000-23542200	Weak transcription	Right Ventricle	heart
4	chr3:23528600-23542200	Weak transcription	Primary B cells from cord blood	blood
5	chr3:23528600-23552200	Weak transcription	Ovary	ovary
6	chr3:23530600-23542200	Weak transcription	Skeletal Muscle Male	skeletal muscle
7	chr3:23531400-23541600	Weak transcription	Fetal Muscle Leg	muscle
8	chr3:23532200-23547800	Weak transcription	NHLF	lung
9	chr3:23532400-23537000	Weak transcription	HMEC	breast
10	chr3:23533400-23537000	Enhancers	Fetal Heart	heart
11	chr3:23535000-23537600	Weak transcription	Aorta	Aorta
12	chr3:23535200-23537800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr3:23535600-23537000	Weak transcription	Brain Hippocampus Middle	brain
14	chr3:23536200-23537200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
15	chr3:23536400-23537000	Enhancers	Fetal Lung	lung
16	chr3:23536400-23537400	Enhancers	Skeletal Muscle Female	skeletal muscle
17	chr3:23536400-23537600	Enhancers	HSMMtube	muscle
18	chr3:23536600-23537000	Enhancers	Colon Smooth Muscle	Colon
19	chr3:23536600-23537400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
20	chr3:23536600-23537400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
21	chr3:23536600-23537400	Enhancers	Sigmoid Colon	Sigmoid Colon
22	chr3:23536600-23537400	Enhancers	NH-A	brain
23	chr3:23536600-23537600	Enhancers	Muscle Satellite Cultured Cells	--
24	chr3:23536600-23537600	Enhancers	NHEK	skin
25	chr3:23536600-23537600	Enhancers	Osteobl	bone
26	chr3:23536600-23537800	Enhancers	Brain Substantia Nigra	brain
27	chr3:23536600-23557200	Weak transcription	Left Ventricle	heart
28	chr3:23536800-23537400	Enhancers	Breast Myoepithelial Primary Cells	Breast
29	chr3:23536800-23537400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
30	chr3:23536800-23537400	Enhancers	Adipose Nuclei	Adipose
31	chr3:23536800-23537400	Enhancers	Brain Cingulate Gyrus	brain
32	chr3:23536800-23537400	Enhancers	Duodenum Smooth Muscle	Duodenum
33	chr3:23536800-23537400	Enhancers	Psoas Muscle	Psoas
34	chr3:23536800-23537400	Enhancers	HSMM	muscle
35	chr3:23536800-23537400	Enhancers	NHDF-Ad	bronchial
36	chr3:23536800-23537600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
37	chr3:23536800-23537600	Enhancers	HUVEC	blood vessel
38	chr3:23536800-23537800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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