Variant report

Variant	rs34477118
Chromosome Location	chr8:99666325-99666326
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 74 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:71)

rs_ID	r²[population]
rs10447977	0.87[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs10755896	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10755897	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10955188	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10955189	0.90[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs10955190	0.81[AFR][1000 genomes];0.87[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs11774463	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11780292	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11780369	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12542649	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12547297	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12549803	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12550012	0.82[ASN][1000 genomes]
rs12550783	0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12675964	0.84[ASN][1000 genomes]
rs12677183	0.88[ASN][1000 genomes]
rs12679268	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12679734	0.84[AMR][1000 genomes]
rs12680195	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12680490	0.81[EUR][1000 genomes]
rs12680602	0.81[AMR][1000 genomes]
rs13257475	0.81[ASN][1000 genomes]
rs13258214	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs13269932	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13271844	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13275372	0.87[AMR][1000 genomes]
rs13275915	0.89[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs13279438	0.89[AMR][1000 genomes]
rs16897076	0.81[ASN][1000 genomes]
rs2442012	0.83[AMR][1000 genomes]
rs2442014	0.83[AMR][1000 genomes]
rs34114299	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs34281206	0.87[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs34366206	0.80[AMR][1000 genomes]
rs34855977	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs35447893	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs35536167	0.87[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs35804297	0.80[AMR][1000 genomes]
rs4131873	0.86[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs4255105	0.84[AMR][1000 genomes]
rs4279561	0.89[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs4304299	0.83[AMR][1000 genomes]
rs4413739	0.82[AMR][1000 genomes]
rs4440607	0.89[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs4509292	0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4517094	0.86[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs4541872	0.84[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs4549741	0.89[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs4562286	0.82[AMR][1000 genomes]
rs4612309	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4734410	0.80[AFR][1000 genomes];0.87[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs4735568	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4735569	0.90[AFR][1000 genomes];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4735570	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4735571	0.80[AFR][1000 genomes];0.89[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs4735574	0.88[AMR][1000 genomes]
rs57034072	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs62532565	0.85[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs62532577	0.84[AMR][1000 genomes]
rs62532587	0.83[AMR][1000 genomes]
rs62535381	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs62535382	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs62535383	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs62535404	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62535408	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62535410	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62535412	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6651182	0.85[AFR][1000 genomes];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6992925	0.81[AFR][1000 genomes];0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72666669	0.82[ASN][1000 genomes]
rs9656842	0.82[AFR][1000 genomes];0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1027362	chr8:99469281-99715845	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv539689	chr8:99469281-99715845	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv891218	chr8:99507313-99906221	Weak transcription Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:99636200-99682400	Weak transcription	Fetal Stomach	stomach
2	chr8:99638200-99671200	Weak transcription	GM12878-XiMat	blood
3	chr8:99652600-99680600	Weak transcription	NHEK	skin
4	chr8:99659400-99676000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr8:99660000-99670200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr8:99663400-99682800	Weak transcription	Placenta	Placenta

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