Variant report

Variant	rs34491075
Chromosome Location	chr1:79001458-79001459
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs11162508	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12060353	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12065196	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12069538	0.80[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12074883	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12723149	1.00[ASN][1000 genomes]
rs12731181	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12737007	1.00[ASN][1000 genomes]
rs12743477	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12750516	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12751216	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17393482	1.00[ASN][1000 genomes]
rs17397597	1.00[ASN][1000 genomes]
rs2057425	0.86[ASN][1000 genomes]
rs34427371	1.00[ASN][1000 genomes]
rs34635429	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34727624	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35153996	0.85[EUR][1000 genomes]
rs35223399	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35337590	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35735651	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35886379	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35922757	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36037890	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36088152	1.00[ASN][1000 genomes]
rs41309153	0.85[EUR][1000 genomes]
rs41313355	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71641401	1.00[ASN][1000 genomes]
rs71643204	1.00[ASN][1000 genomes]
rs71643205	0.81[EUR][1000 genomes]
rs7539356	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7539847	1.00[ASN][1000 genomes]
rs898	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs899	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv871835	chr1:78528803-79501129	Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	nsv870807	chr1:78867347-79032598	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	1 gene(s)	inside rSNPs	diseases
3	nsv870919	chr1:78993841-79010670	Enhancers Strong transcription Weak transcription Genic enhancers	miRNA target site	n/a	inside rSNPs	n/a

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:78993200-79002000	Weak transcription	NHDF-Ad	bronchial
2	chr1:78994000-79002000	Weak transcription	Muscle Satellite Cultured Cells	--
3	chr1:78998000-79001800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr1:79000600-79003000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr1:79001000-79002600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links