Variant report

Variant	rs34505658
Chromosome Location	chr14:70311211-70311212
allele	-/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10130729	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10131029	0.91[EUR][1000 genomes]
rs10134740	0.91[EUR][1000 genomes]
rs10141725	0.92[EUR][1000 genomes]
rs10145497	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10148661	0.92[EUR][1000 genomes]
rs10149496	1.00[ASN][1000 genomes]
rs11625824	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1952196	0.85[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs1952197	0.85[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs2094272	0.89[EUR][1000 genomes]
rs2332169	0.92[EUR][1000 genomes]
rs4499177	0.92[EUR][1000 genomes]
rs55819213	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv456336	chr14:70081956-70574149	Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	75 gene(s)	inside rSNPs	diseases
2	nsv565007	chr14:70081956-70574149	Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	75 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:70309400-70312600	Enhancers	Brain Germinal Matrix	brain
2	chr14:70310000-70315000	Enhancers	HepG2	liver
3	chr14:70310200-70316200	Weak transcription	Fetal Brain Female	brain
4	chr14:70310600-70315600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr14:70310800-70312400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr14:70310800-70315800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr14:70311200-70312600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr14:70311200-70316800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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