Variant report

Variant	rs34516562
Chromosome Location	chr14:69844883-69844884
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:69839397..69841083-chr14:69844631..69847497,2	MCF-7	breast:
2	chr14:69841356..69843635-chr14:69843836..69846318,2	K562	blood:
3	chr14:69832322..69833940-chr14:69843790..69845476,2	MCF-7	breast:
4	chr14:69843804..69846515-chr14:69848957..69850700,2	MCF-7	breast:
5	chr14:69824235..69826782-chr14:69843380..69845607,3	MCF-7	breast:
6	chr14:69842726..69844478-chr14:69844525..69846772,2	MCF-7	breast:
7	chr14:69843007..69844959-chr14:69863528..69866274,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000029364	Chromatin interaction
ENSG00000100632	Chromatin interaction

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs11158804	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12232173	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12589991	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12879303	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12879627	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12880219	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12883441	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12884978	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12893687	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12896978	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17106973	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34218656	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs34230540	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34433939	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs34621266	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs34625331	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34859711	0.84[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs34862239	0.95[ASN][1000 genomes]
rs34864264	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34953569	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35515794	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35532206	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs35657710	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35695471	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35724400	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35828634	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs36027932	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36037391	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs3784141	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs61980352	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61980353	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61980354	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61982360	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61982397	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs61982398	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61982401	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs61982420	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs61982422	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs61982424	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs67081339	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71423357	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7144886	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7145781	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72625682	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:69821800-69852400	Weak transcription	Spleen	Spleen
2	chr14:69824200-69864000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr14:69830000-69847200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr14:69831200-69852400	Weak transcription	Brain Substantia Nigra	brain
5	chr14:69833200-69845600	Weak transcription	Fetal Stomach	stomach
6	chr14:69835400-69851800	Weak transcription	Psoas Muscle	Psoas
7	chr14:69835600-69851600	Weak transcription	Pancreas	Pancrea
8	chr14:69835800-69852400	Weak transcription	Small Intestine	intestine
9	chr14:69836800-69851600	Weak transcription	Gastric	stomach
10	chr14:69837000-69845800	Weak transcription	Sigmoid Colon	Sigmoid Colon
11	chr14:69837200-69860000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
12	chr14:69837400-69851000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr14:69838000-69846200	Weak transcription	Esophagus	oesophagus
14	chr14:69839200-69852200	Weak transcription	Aorta	Aorta
15	chr14:69839800-69851600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
16	chr14:69840000-69845000	Weak transcription	K562	blood
17	chr14:69840800-69851600	Weak transcription	Colonic Mucosa	Colon
18	chr14:69840800-69852400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
19	chr14:69841000-69845200	Strong transcription	Liver	Liver
20	chr14:69841000-69863400	Strong transcription	A549	lung
21	chr14:69841200-69863000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
22	chr14:69841400-69847800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr14:69841400-69862800	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
24	chr14:69841600-69848600	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
25	chr14:69841600-69858000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
26	chr14:69841600-69863400	Strong transcription	HUES6 Cell Line	embryonic stem cell
27	chr14:69841800-69848400	Strong transcription	Rectal Mucosa Donor 29	rectum
28	chr14:69841800-69849800	Strong transcription	Duodenum Mucosa	Duodenum
29	chr14:69841800-69857800	Strong transcription	Primary T cells fromperipheralblood	blood
30	chr14:69841800-69863000	Strong transcription	HUES64 Cell Line	embryonic stem cell
31	chr14:69841800-69863800	Weak transcription	Stomach Mucosa	stomach
32	chr14:69842000-69851400	Strong transcription	Primary T helper cells fromperipheralblood	blood
33	chr14:69842000-69852400	Weak transcription	Fetal Brain Male	brain
34	chr14:69842000-69858600	Weak transcription	Fetal Heart	heart
35	chr14:69842200-69846800	Strong transcription	NHEK	skin
36	chr14:69842200-69847800	Strong transcription	Thymus	Thymus
37	chr14:69842200-69857800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
38	chr14:69842400-69846600	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
39	chr14:69842400-69849000	Strong transcription	HepG2	liver
40	chr14:69842400-69854400	Strong transcription	Primary T helper cells PMA-I stimulated	--
41	chr14:69842600-69845400	Enhancers	Primary neutrophils fromperipheralblood	blood
42	chr14:69842600-69848400	Strong transcription	Placenta	Placenta
43	chr14:69842600-69863200	Strong transcription	iPS-20b Cell Line	embryonic stem cell
44	chr14:69842800-69854800	Strong transcription	Primary T cells from cord blood	blood
45	chr14:69842800-69857800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
46	chr14:69842800-69862800	Strong transcription	Fetal Thymus	thymus
47	chr14:69843000-69847400	Strong transcription	GM12878-XiMat	blood
48	chr14:69843000-69848000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
49	chr14:69843000-69854000	Strong transcription	Hela-S3	cervix
50	chr14:69843200-69845000	Strong transcription	ES-I3 Cell Line	embryonic stem cell

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