Variant report

Variant	rs34520181
Chromosome Location	chr14:65752470-65752471
allele	-/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:65751559..65753214-chr14:65820526..65823180,2	MCF-7	breast:
2	chr14:65751346..65755635-chr14:65876089..65881787,7	MCF-7	breast:

Variant related genes	Relation type
ENSG00000033170	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs11158590	1.00[ASN][1000 genomes]
rs17779061	1.00[ASN][1000 genomes]
rs2792213	1.00[ASN][1000 genomes]
rs61746615	1.00[ASN][1000 genomes]
rs7141874	1.00[ASN][1000 genomes]
rs946917	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832817	chr14:65637069-65810406	Bivalent Enhancer Flanking Active TSS Active TSS Weak transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	14 gene(s)	inside rSNPs	diseases
2	nsv832818	chr14:65706859-65882320	Enhancers Strong transcription Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	20 gene(s)	inside rSNPs	diseases
3	nsv1036403	chr14:65724229-66208114	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
4	nsv515522	chr14:65746566-65771110	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:56 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:65747600-65758400	Weak transcription	Pancreas	Pancrea
2	chr14:65749600-65753800	Weak transcription	Right Ventricle	heart
3	chr14:65749800-65752600	Enhancers	Primary T cells from cord blood	blood
4	chr14:65749800-65753600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr14:65749800-65753800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr14:65749800-65753800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr14:65749800-65753800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
8	chr14:65749800-65753800	Weak transcription	Dnd41	blood
9	chr14:65749800-65754400	Weak transcription	Primary monocytes fromperipheralblood	blood
10	chr14:65750000-65754600	Weak transcription	Rectal Mucosa Donor 29	rectum
11	chr14:65750000-65757800	Weak transcription	NHEK	skin
12	chr14:65750200-65752600	Enhancers	Brain Cingulate Gyrus	brain
13	chr14:65750200-65753200	Weak transcription	HUES6 Cell Line	embryonic stem cell
14	chr14:65750200-65754000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
15	chr14:65750400-65752600	Enhancers	GM12878-XiMat	blood
16	chr14:65750400-65753200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
17	chr14:65750400-65753200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
18	chr14:65750400-65753200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr14:65750400-65753200	Weak transcription	Thymus	Thymus
20	chr14:65750400-65753400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
21	chr14:65750400-65753800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
22	chr14:65750400-65753800	Weak transcription	Gastric	stomach
23	chr14:65750400-65754000	Weak transcription	Duodenum Mucosa	Duodenum
24	chr14:65750400-65754200	Weak transcription	Sigmoid Colon	Sigmoid Colon
25	chr14:65750400-65754400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
26	chr14:65750400-65755800	Weak transcription	NHDF-Ad	bronchial
27	chr14:65750400-65756800	Weak transcription	Osteobl	bone
28	chr14:65750600-65753400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
29	chr14:65750600-65753400	Weak transcription	Primary hematopoietic stem cells	blood
30	chr14:65750600-65753400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
31	chr14:65750600-65753800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
32	chr14:65750600-65754000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
33	chr14:65750600-65756400	Weak transcription	NH-A	brain
34	chr14:65751000-65753200	Weak transcription	Primary T cells fromperipheralblood	blood
35	chr14:65751000-65753200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
36	chr14:65751000-65754000	Weak transcription	Spleen	Spleen
37	chr14:65751200-65753200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
38	chr14:65751200-65754000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
39	chr14:65751400-65753200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
40	chr14:65751400-65753200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
41	chr14:65751400-65753200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
42	chr14:65751400-65753200	Weak transcription	Primary T helper cells PMA-I stimulated	--
43	chr14:65751400-65753200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
44	chr14:65751400-65753200	Weak transcription	Fetal Thymus	thymus
45	chr14:65751400-65753400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
46	chr14:65751800-65753200	Weak transcription	Primary T helper cells fromperipheralblood	blood
47	chr14:65751800-65753600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
48	chr14:65752000-65757000	Weak transcription	NHLF	lung
49	chr14:65752000-65757800	Weak transcription	Stomach Mucosa	stomach
50	chr14:65752200-65753200	Weak transcription	Primary B cells from cord blood	blood

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