Variant report

Variant	rs34564731
Chromosome Location	chr14:105968978-105968979
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:105968511..105971018-chr14:105977126..105978783,2	K562	blood:

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs10133083	0.90[EUR][1000 genomes]
rs10136015	0.91[EUR][1000 genomes]
rs10139300	0.90[EUR][1000 genomes]
rs10139744	0.91[EUR][1000 genomes]
rs10147392	0.89[EUR][1000 genomes]
rs10151805	0.90[EUR][1000 genomes]
rs10152050	0.87[EUR][1000 genomes]
rs11622603	0.97[EUR][1000 genomes]
rs11628497	0.90[EUR][1000 genomes]
rs12232113	0.87[ASN][1000 genomes]
rs12717698	0.88[EUR][1000 genomes]
rs12893999	0.90[EUR][1000 genomes]
rs13379293	0.86[EUR][1000 genomes]
rs28385363	0.86[ASN][1000 genomes]
rs28402171	0.88[EUR][1000 genomes]
rs28431397	0.91[EUR][1000 genomes]
rs28464276	0.86[ASN][1000 genomes]
rs28700121	0.86[ASN][1000 genomes]
rs28771143	0.82[ASN][1000 genomes]
rs28785039	0.86[ASN][1000 genomes]
rs28807390	0.86[ASN][1000 genomes]
rs28837201	0.87[ASN][1000 genomes]
rs28888427	0.86[ASN][1000 genomes]
rs35240373	0.97[EUR][1000 genomes]
rs35471125	0.97[EUR][1000 genomes]
rs35511437	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35590487	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs35723046	0.89[EUR][1000 genomes]
rs35921705	0.97[EUR][1000 genomes]
rs55958808	0.91[EUR][1000 genomes]
rs58087925	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs66710832	0.86[EUR][1000 genomes]
rs7141834	0.88[EUR][1000 genomes]
rs7158619	0.91[ASN][1000 genomes]
rs7160747	0.87[EUR][1000 genomes]
rs72478887	0.86[ASN][1000 genomes]
rs72713322	0.95[EUR][1000 genomes]
rs72713323	0.97[EUR][1000 genomes]
rs73371879	0.94[ASN][1000 genomes]
rs73371887	0.93[ASN][1000 genomes]
rs73371895	0.94[ASN][1000 genomes]
rs74091235	0.87[ASN][1000 genomes]
rs8003942	0.90[EUR][1000 genomes]
rs8004007	0.90[EUR][1000 genomes]
rs8005568	0.90[EUR][1000 genomes]
rs8013055	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs8013827	0.90[EUR][1000 genomes]
rs8014713	0.89[EUR][1000 genomes]
rs8014913	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530813	chr14:105607701-106453697	Strong transcription Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	149 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:105957800-105971800	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr14:105958200-105969200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr14:105958400-105973800	Weak transcription	Primary T cells from cord blood	blood
4	chr14:105960000-105970800	Weak transcription	Fetal Brain Female	brain
5	chr14:105964800-105970600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr14:105965600-105969000	Weak transcription	Placenta Amnion	Placenta Amnion
7	chr14:105965600-105969600	Weak transcription	Adipose Nuclei	Adipose
8	chr14:105965600-105970000	Weak transcription	Dnd41	blood
9	chr14:105965600-105974400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
10	chr14:105966400-105969600	Weak transcription	Primary neutrophils fromperipheralblood	blood
11	chr14:105966600-105970600	Weak transcription	Fetal Intestine Small	intestine
12	chr14:105966800-105969600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr14:105966800-105969600	Weak transcription	Thymus	Thymus
14	chr14:105967000-105970600	Weak transcription	A549	lung
15	chr14:105967000-105970800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
16	chr14:105967000-105970800	Enhancers	HepG2	liver
17	chr14:105967200-105970600	Weak transcription	Brain Substantia Nigra	brain
18	chr14:105967400-105970800	Weak transcription	Pancreas	Pancrea
19	chr14:105968800-105969200	Enhancers	Spleen	Spleen

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