Variant report

Variant	rs34565296
Chromosome Location	chr11:33711085-33711086
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:33709338..33711234-chr11:33792964..33795417,2	K562	blood:
2	chr11:33710199..33713605-chr11:33756401..33760125,5	MCF-7	breast:
3	chr11:33710008..33711953-chr11:33744386..33747195,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000085063	Chromatin interaction
ENSG00000110429	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10501128	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10768019	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10768020	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10768021	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10836100	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11032341	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11032343	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11032344	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1569764	0.97[ASN][1000 genomes]
rs4142964	0.97[ASN][1000 genomes]
rs4356198	0.94[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7127596	0.94[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7928865	0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832113	chr11:33609202-33767781	Transcr. at gene 5' and 3' Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:59 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:33691000-33712400	Weak transcription	Psoas Muscle	Psoas
2	chr11:33694000-33713600	Weak transcription	Fetal Brain Female	brain
3	chr11:33704200-33711200	Weak transcription	Lung	lung
4	chr11:33704400-33712200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr11:33706000-33714200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr11:33706200-33712200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
7	chr11:33706200-33712200	Weak transcription	Brain Germinal Matrix	brain
8	chr11:33706200-33712400	Weak transcription	H1 Cell Line	embryonic stem cell
9	chr11:33706600-33714200	Weak transcription	H9 Cell Line	embryonic stem cell
10	chr11:33706800-33712600	Weak transcription	HUES64 Cell Line	embryonic stem cell
11	chr11:33707000-33712200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr11:33709200-33712600	Enhancers	NH-A	brain
13	chr11:33709200-33721800	Enhancers	HMEC	breast
14	chr11:33709400-33711200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr11:33709400-33711400	Enhancers	A549	lung
16	chr11:33709400-33712200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr11:33709400-33719800	Enhancers	Cortex derived primary cultured neurospheres	brain
18	chr11:33709600-33711400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr11:33709600-33711400	Enhancers	HUVEC	blood vessel
20	chr11:33709600-33717200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr11:33709600-33722200	Enhancers	Stomach Mucosa	stomach
22	chr11:33709800-33711800	Weak transcription	Brain Anterior Caudate	brain
23	chr11:33709800-33712200	Enhancers	NHLF	lung
24	chr11:33709800-33712400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
25	chr11:33710200-33711200	Enhancers	HSMM	muscle
26	chr11:33710200-33712600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
27	chr11:33710200-33712600	Enhancers	Adipose Nuclei	Adipose
28	chr11:33710400-33711400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
29	chr11:33710400-33711400	Enhancers	Esophagus	oesophagus
30	chr11:33710400-33711600	Enhancers	Pancreas	Pancrea
31	chr11:33710400-33711800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
32	chr11:33710400-33711800	Flanking Active TSS	NHEK	skin
33	chr11:33710400-33712200	Enhancers	Osteobl	bone
34	chr11:33710400-33713600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
35	chr11:33710400-33717200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
36	chr11:33710400-33717200	Enhancers	Left Ventricle	heart
37	chr11:33710600-33711600	Enhancers	Spleen	Spleen
38	chr11:33710600-33711800	Flanking Active TSS	Muscle Satellite Cultured Cells	--
39	chr11:33710600-33713200	Flanking Active TSS	NHDF-Ad	bronchial
40	chr11:33710600-33713400	Enhancers	HSMMtube	muscle
41	chr11:33710600-33713800	Enhancers	Placenta Amnion	Placenta Amnion
42	chr11:33710600-33714600	Flanking Active TSS	Hela-S3	cervix
43	chr11:33710600-33715400	Enhancers	Placenta	Placenta
44	chr11:33710600-33715400	Enhancers	Right Atrium	heart
45	chr11:33710800-33711200	Weak transcription	HepG2	liver
46	chr11:33710800-33711400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
47	chr11:33710800-33711600	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
48	chr11:33710800-33713200	Enhancers	K562	blood
49	chr11:33710800-33713400	Enhancers	Gastric	stomach
50	chr11:33710800-33713600	Enhancers	Skeletal Muscle Male	skeletal muscle

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