Variant report

Variant	rs34575286
Chromosome Location	chr9:71358493-71358494
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:71357154..71359879-chr9:71394031..71396553,2	MCF-7	breast:
2	chr9:71318773..71321660-chr9:71357020..71360216,3	K562	blood:
3	chr9:71353906..71356063-chr9:71357403..71360003,2	K562	blood:

Variant related genes	Relation type
ENSG00000187866	Chromatin interaction
ENSG00000107242	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs11789971	0.87[ASN][1000 genomes]
rs12682815	0.87[ASN][1000 genomes]
rs12686355	0.83[ASN][1000 genomes]
rs13299226	0.83[ASN][1000 genomes]
rs4745236	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7044422	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1032210	chr9:71130848-71511987	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	esv2422258	chr9:71234845-71663340	Enhancers Flanking Active TSS Strong transcription Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
3	nsv1017903	chr9:71276951-71690579	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
4	nsv893415	chr9:71347988-71364351	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:71343400-71363000	Weak transcription	GM12878-XiMat	blood
2	chr9:71348200-71359000	Weak transcription	Lung	lung
3	chr9:71351000-71370600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr9:71351200-71360000	Weak transcription	Gastric	stomach
5	chr9:71352400-71365800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr9:71354800-71361600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr9:71355000-71359000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr9:71355000-71359400	Weak transcription	Right Ventricle	heart
9	chr9:71355000-71360000	Weak transcription	H9 Cell Line	embryonic stem cell
10	chr9:71355000-71362000	Weak transcription	Primary monocytes fromperipheralblood	blood
11	chr9:71355000-71364400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
12	chr9:71355000-71365400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
13	chr9:71355400-71358600	Weak transcription	Primary hematopoietic stem cells	blood
14	chr9:71355400-71361600	Weak transcription	Rectal Smooth Muscle	rectum
15	chr9:71355600-71361600	Weak transcription	Placenta Amnion	Placenta Amnion
16	chr9:71355600-71364200	Weak transcription	Primary neutrophils fromperipheralblood	blood
17	chr9:71356000-71358800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
18	chr9:71356200-71362400	Genic enhancers	Fetal Intestine Small	intestine
19	chr9:71356200-71364800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr9:71356600-71358800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
21	chr9:71356600-71361600	Weak transcription	Colonic Mucosa	Colon
22	chr9:71356800-71358800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
23	chr9:71356800-71359400	Weak transcription	Left Ventricle	heart
24	chr9:71356800-71359800	Weak transcription	Right Atrium	heart
25	chr9:71356800-71361400	Weak transcription	Pancreas	Pancrea
26	chr9:71356800-71361400	Weak transcription	Rectal Mucosa Donor 29	rectum
27	chr9:71356800-71361400	Weak transcription	Sigmoid Colon	Sigmoid Colon
28	chr9:71356800-71362800	Weak transcription	Small Intestine	intestine
29	chr9:71357200-71359600	Weak transcription	K562	blood
30	chr9:71357200-71360200	Weak transcription	Aorta	Aorta
31	chr9:71357200-71363400	Strong transcription	Primary B cells from peripheral blood	blood
32	chr9:71357600-71358600	Enhancers	Placenta	Placenta
33	chr9:71357600-71360600	Genic enhancers	Fetal Intestine Large	intestine
34	chr9:71357800-71358800	Genic enhancers	Fetal Heart	heart
35	chr9:71357800-71359800	Weak transcription	Stomach Mucosa	stomach
36	chr9:71357800-71360200	Strong transcription	Duodenum Mucosa	Duodenum
37	chr9:71357800-71362600	Strong transcription	Primary B cells from cord blood	blood
38	chr9:71358000-71360600	Strong transcription	Rectal Mucosa Donor 31	rectum
39	chr9:71358200-71359200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
40	chr9:71358400-71359200	Genic enhancers	HepG2	liver

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links