Variant report

Variant	rs34580087
Chromosome Location	chr8:99486750-99486751
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:99481593..99484303-chr8:99484870..99487403,2	K562	blood:
2	chr8:99486023..99488749-chr8:99617770..99619373,2	K562	blood:
3	chr8:99457964..99459515-chr8:99485863..99487578,2	MCF-7	breast:
4	chr8:99478927..99480838-chr8:99485184..99486996,2	MCF-7	breast:

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs10086870	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10098835	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10099978	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10100378	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10100546	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10100577	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10101919	0.86[ASN][1000 genomes]
rs10111264	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10441501	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10955174	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10955175	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10955176	0.92[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10955177	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10955178	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10955179	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10955180	0.86[ASN][1000 genomes]
rs10955181	0.86[ASN][1000 genomes]
rs10955184	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10955185	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11781352	0.97[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11985382	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12056323	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12541026	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12542022	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12542931	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12544768	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12547922	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12548477	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12549563	0.81[AMR][1000 genomes]
rs12550198	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13268777	0.81[ASN][1000 genomes]
rs16892236	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs1893884	0.83[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs3802198	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4130753	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs4236853	0.81[AMR][1000 genomes]
rs4301421	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4332102	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4370499	0.88[AMR][1000 genomes]
rs4388428	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4407850	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4618666	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4734406	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4734407	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4735564	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4995528	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62532757	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6651181	0.85[ASN][1000 genomes]
rs6993480	0.83[EUR][1000 genomes]
rs7007360	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7011763	0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7015739	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7815227	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7845395	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7845750	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9642951	0.94[AMR][1000 genomes];0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1027362	chr8:99469281-99715845	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv539689	chr8:99469281-99715845	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:99461800-99525000	Weak transcription	Psoas Muscle	Psoas
2	chr8:99477400-99491400	Weak transcription	Fetal Muscle Trunk	muscle
3	chr8:99479600-99488600	Weak transcription	HUVEC	blood vessel
4	chr8:99479600-99490000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr8:99479600-99504600	Weak transcription	NHEK	skin
6	chr8:99479800-99502800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr8:99480200-99490400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr8:99480600-99490200	Weak transcription	NHLF	lung
9	chr8:99483200-99490000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr8:99483400-99488200	Weak transcription	HSMMtube	muscle
11	chr8:99483800-99489200	Weak transcription	Muscle Satellite Cultured Cells	--
12	chr8:99484800-99489000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr8:99485600-99489000	Weak transcription	NHDF-Ad	bronchial
14	chr8:99485600-99490200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr8:99485800-99488800	Weak transcription	Osteobl	bone
16	chr8:99485800-99489200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
17	chr8:99486200-99489400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr8:99486400-99490800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr8:99486400-99491000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr8:99486600-99488600	Weak transcription	Ovary	ovary
21	chr8:99486600-99489200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
22	chr8:99486600-99536000	Weak transcription	Placenta	Placenta

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links