Variant report

Variant	rs34580776
Chromosome Location	chr11:47367871-47367872
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:11)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:11 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:47358646..47361164-chr11:47367434..47369849,2	MCF-7	breast:
2	chr11:47289586..47293263-chr11:47367721..47372690,6	MCF-7	breast:
3	chr11:47362842..47364563-chr11:47366345..47368440,2	K562	blood:
4	chr11:47367659..47370782-chr11:47372358..47376235,4	K562	blood:
5	chr11:47289341..47292916-chr11:47365882..47368647,4	MCF-7	breast:
6	chr11:47362758..47365324-chr11:47366232..47368748,4	MCF-7	breast:
7	chr11:47366884..47369322-chr11:47374735..47376976,2	K562	blood:
8	chr11:47362842..47365902-chr11:47366345..47370723,5	K562	blood:
9	chr11:47363419..47366259-chr11:47367466..47368974,2	MCF-7	breast:
10	chr11:47360279..47361915-chr11:47365938..47368150,2	K562	blood:
11	chr11:47363652..47368436-chr11:47368498..47371185,5	K562	blood:

No data

No data

No data

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs55993545	1.00[EUR][1000 genomes]
rs57830455	1.00[EUR][1000 genomes]
rs57878668	1.00[EUR][1000 genomes]
rs58841898	1.00[EUR][1000 genomes]
rs59409510	1.00[EUR][1000 genomes]
rs60582355	1.00[EUR][1000 genomes]
rs73453709	1.00[EUR][1000 genomes]
rs73453756	1.00[EUR][1000 genomes]
rs73459751	1.00[EUR][1000 genomes]
rs73459799	1.00[EUR][1000 genomes]
rs73461723	1.00[EUR][1000 genomes]
rs73461734	1.00[EUR][1000 genomes]
rs73461744	1.00[EUR][1000 genomes]
rs73461779	1.00[EUR][1000 genomes]
rs73461796	1.00[EUR][1000 genomes]
rs73461797	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv897323	chr11:47182926-47460306	Genic enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	96 gene(s)	inside rSNPs	diseases
2	nsv917316	chr11:47232210-47448882	Weak transcription Strong transcription Genic enhancers Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	81 gene(s)	inside rSNPs	diseases
3	esv3330173	chr11:47289256-47450681	Enhancers Flanking Active TSS Strong transcription Weak transcription Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	62 gene(s)	inside rSNPs	diseases
4	esv3416377	chr11:47289276-47450651	Active TSS Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Weak transcription Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	62 gene(s)	inside rSNPs	diseases
5	nsv832141	chr11:47333180-47520993	Flanking Active TSS Genic enhancers Enhancers Strong transcription Weak transcription Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	44 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:47343200-47370600	Strong transcription	Primary neutrophils fromperipheralblood	blood
2	chr11:47351400-47375600	Weak transcription	Primary B cells from cord blood	blood
3	chr11:47353600-47375400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
4	chr11:47354000-47369800	Weak transcription	Right Atrium	heart
5	chr11:47354800-47372800	Weak transcription	Gastric	stomach
6	chr11:47364000-47370600	Enhancers	Fetal Heart	heart
7	chr11:47364000-47372200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr11:47364400-47369000	Strong transcription	Left Ventricle	heart
9	chr11:47364600-47370600	Weak transcription	Spleen	Spleen
10	chr11:47366800-47368600	Strong transcription	Primary monocytes fromperipheralblood	blood
11	chr11:47367200-47369200	Genic enhancers	Right Ventricle	heart
12	chr11:47367200-47372200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr11:47367400-47369800	Strong transcription	Monocytes-CD14+_RO01746	blood
14	chr11:47367600-47369000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
15	chr11:47367800-47368200	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin02	Skin
16	chr11:47367800-47377200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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