Variant report

Variant	rs34589296
Chromosome Location	chr4:144133198-144133199
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:144132280..144134329-chr4:144416200..144418882,2	K562	blood:
2	chr4:144131210..144134045-chr4:144135532..144137105,2	MCF-7	breast:
3	chr4:144127950..144129588-chr4:144131950..144133669,2	K562	blood:
4	chr4:144127950..144130410-chr4:144132169..144133963,2	K562	blood:
5	chr4:144132851..144134995-chr4:144136315..144138914,2	K562	blood:

Extended variants
information (count: 112 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:111)

rs_ID	r²[population]
rs10000831	0.83[ASN][1000 genomes]
rs10461277	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10461278	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10461279	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10519679	0.95[EUR][1000 genomes]
rs1108827	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11933189	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11935914	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11941742	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11945672	1.00[ASN][1000 genomes]
rs12711407	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13104755	0.87[AMR][1000 genomes]
rs13105227	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13105258	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13107986	0.81[AMR][1000 genomes]
rs13111543	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs13113118	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13113907	0.83[ASN][1000 genomes]
rs13118809	0.87[AMR][1000 genomes]
rs13127055	0.87[AMR][1000 genomes]
rs13130995	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13131510	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13137712	0.93[AMR][1000 genomes]
rs13140326	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13141368	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13141417	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13142436	0.80[EUR][1000 genomes]
rs13145081	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13145718	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs17017424	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2102494	0.83[ASN][1000 genomes]
rs28452225	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28654139	0.83[ASN][1000 genomes]
rs28797214	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs28891127	0.83[ASN][1000 genomes]
rs300907	0.88[EUR][1000 genomes]
rs300932	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs300933	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs300937	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs300942	0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs300944	0.90[EUR][1000 genomes]
rs300945	0.90[EUR][1000 genomes]
rs300950	0.90[EUR][1000 genomes]
rs34176541	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34192902	0.87[AMR][1000 genomes]
rs34198661	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34225955	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34234071	0.81[AMR][1000 genomes]
rs34376112	0.83[ASN][1000 genomes]
rs34398038	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs34461753	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34474130	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34583666	0.81[AMR][1000 genomes]
rs34652171	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34770317	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34780033	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs35021023	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35027946	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs35095943	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35143494	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35305979	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35311425	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35416586	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs35549285	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35607189	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35887480	0.95[EUR][1000 genomes]
rs35909303	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35971728	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35988039	0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4554015	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4690751	0.83[ASN][1000 genomes]
rs4690772	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55693016	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs55846476	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56085707	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56142323	0.93[EUR][1000 genomes]
rs603861	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs603934	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs604746	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6537143	0.83[ASN][1000 genomes]
rs6834491	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6842633	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6853356	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6857448	0.83[ASN][1000 genomes]
rs686770	0.85[EUR][1000 genomes]
rs71610408	0.83[ASN][1000 genomes]
rs71610420	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71610422	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71610423	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71610426	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71610427	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71610428	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71610429	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71610430	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs71610431	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs71610432	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs71610438	0.87[AMR][1000 genomes]
rs71610439	0.81[AMR][1000 genomes]
rs71610440	0.87[AMR][1000 genomes]
rs71610442	0.87[AMR][1000 genomes]
rs726022	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7655033	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7661883	0.83[ASN][1000 genomes]
rs7663712	0.82[AMR][1000 genomes]
rs7670050	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7670426	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7674403	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7686023	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9637656	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9994551	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9997167	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1033902	chr4:144114413-144285772	Active TSS Strong transcription Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:144107400-144137200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr4:144109200-144142800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr4:144109800-144138200	Strong transcription	Fetal Thymus	thymus
4	chr4:144110200-144136600	Strong transcription	Primary T cells fromperipheralblood	blood
5	chr4:144110200-144138000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
6	chr4:144110200-144145600	Weak transcription	Stomach Mucosa	stomach
7	chr4:144110800-144137400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr4:144111400-144137400	Strong transcription	Monocytes-CD14+_RO01746	blood
9	chr4:144111800-144136200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr4:144113000-144137400	Strong transcription	Dnd41	blood
11	chr4:144114600-144137400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
12	chr4:144114800-144136200	Strong transcription	Primary T helper cells fromperipheralblood	blood
13	chr4:144118400-144134800	Weak transcription	Gastric	stomach
14	chr4:144118400-144142600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
15	chr4:144118400-144142800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
16	chr4:144118400-144143000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr4:144118400-144150000	Weak transcription	Aorta	Aorta
18	chr4:144118800-144135600	Weak transcription	Pancreatic Islets	Pancreatic Islet
19	chr4:144118800-144136400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
20	chr4:144119200-144136200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
21	chr4:144119400-144144400	Weak transcription	Hela-S3	cervix
22	chr4:144120400-144133400	Weak transcription	Cortex derived primary cultured neurospheres	brain
23	chr4:144120600-144134800	Weak transcription	H9 Cell Line	embryonic stem cell
24	chr4:144120600-144142800	Weak transcription	Spleen	Spleen
25	chr4:144120600-144147000	Weak transcription	Esophagus	oesophagus
26	chr4:144120800-144133400	Weak transcription	Brain Substantia Nigra	brain
27	chr4:144120800-144149400	Weak transcription	Pancreas	Pancrea
28	chr4:144121000-144139800	Weak transcription	Brain Angular Gyrus	brain
29	chr4:144122000-144134800	Weak transcription	Psoas Muscle	Psoas
30	chr4:144122200-144134800	Weak transcription	Brain Cingulate Gyrus	brain
31	chr4:144122400-144133400	Weak transcription	Small Intestine	intestine
32	chr4:144122400-144145600	Weak transcription	Right Ventricle	heart
33	chr4:144122600-144134200	Weak transcription	Thymus	Thymus
34	chr4:144122600-144134800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
35	chr4:144122800-144144600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
36	chr4:144122800-144145800	Weak transcription	Colonic Mucosa	Colon
37	chr4:144124200-144136800	Strong transcription	GM12878-XiMat	blood
38	chr4:144124400-144137600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
39	chr4:144124600-144136000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
40	chr4:144124600-144137600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
41	chr4:144125800-144155600	Weak transcription	Fetal Stomach	stomach
42	chr4:144126000-144136200	Weak transcription	Rectal Smooth Muscle	rectum
43	chr4:144126000-144142800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
44	chr4:144126400-144135000	Weak transcription	Fetal Brain Male	brain
45	chr4:144126400-144135000	Weak transcription	Fetal Brain Female	brain
46	chr4:144126600-144134800	Weak transcription	Brain Inferior Temporal Lobe	brain
47	chr4:144126600-144134800	Weak transcription	Fetal Kidney	kidney
48	chr4:144126600-144137600	Weak transcription	Fetal Heart	heart
49	chr4:144126600-144142800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
50	chr4:144126600-144146200	Weak transcription	A549	lung

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