Variant report

Variant	rs34607504
Chromosome Location	chr11:71916766-71916767
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs11235461	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11235463	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11235465	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11235466	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12799010	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12799376	0.81[EUR][1000 genomes]
rs2071010	0.92[EUR][1000 genomes]
rs34030891	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs34180002	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs34465999	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs35954619	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs36083292	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs36147472	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs67805606	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs72966477	0.83[EUR][1000 genomes]
rs7934420	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530623	chr11:71088949-72020418	Enhancers Transcr. at gene 5' and 3' Active TSS Strong transcription Bivalent Enhancer Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	134 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:71914000-71920800	Enhancers	Primary monocytes fromperipheralblood	blood
2	chr11:71915200-71917200	Enhancers	Monocytes-CD14+_RO01746	blood
3	chr11:71916200-71919600	Weak transcription	Primary hematopoietic stem cells short term culture	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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