Variant report

Variant	rs34609757
Chromosome Location	chr1:85855332-85855333
allele	-/A
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs1045609	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs11802390	1.00[AMR][1000 genomes]
rs11802530	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11802673	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11806417	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11808537	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11809702	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11809826	1.00[AMR][1000 genomes]
rs11809833	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11811123	1.00[AMR][1000 genomes]
rs12033170	1.00[AFR][1000 genomes]
rs17127818	1.00[EUR][1000 genomes]
rs233070	1.00[AMR][1000 genomes]
rs233122	1.00[EUR][1000 genomes]
rs34799808	1.00[AMR][1000 genomes]
rs36069698	1.00[AMR][1000 genomes]
rs4564196	1.00[EUR][1000 genomes]
rs74098846	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1006994	chr1:85454304-86327679	Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	72 gene(s)	inside rSNPs	diseases
2	nsv830470	chr1:85820775-86014080	Enhancers Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv1008877	chr1:85843238-85897570	Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:85839800-85864200	Weak transcription	Aorta	Aorta
2	chr1:85841200-85859800	Weak transcription	NH-A	brain
3	chr1:85845000-85870000	Weak transcription	HSMMtube	muscle
4	chr1:85845800-85859800	Weak transcription	NHLF	lung
5	chr1:85849400-85861600	Weak transcription	Muscle Satellite Cultured Cells	--
6	chr1:85849400-85863400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr1:85850800-85863600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr1:85852400-85863400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr1:85852400-85864200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr1:85852600-85860000	Weak transcription	Gastric	stomach
11	chr1:85852800-85858800	Weak transcription	HSMM	muscle
12	chr1:85852800-85859800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr1:85853200-85861800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr1:85853600-85861800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr1:85853800-85858800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
16	chr1:85853800-85861600	Weak transcription	NHDF-Ad	bronchial
17	chr1:85853800-85864200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
18	chr1:85854000-85861800	Weak transcription	Osteobl	bone
19	chr1:85854400-85859000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr1:85854600-85862800	Weak transcription	Liver	Liver
21	chr1:85854600-85863400	Weak transcription	HUVEC	blood vessel
22	chr1:85854800-85857000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
23	chr1:85855200-85870000	Weak transcription	Fetal Stomach	stomach

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