Variant report

Variant	rs34622594
Chromosome Location	chr9:17557152-17557153
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10810800	0.89[EUR][1000 genomes]
rs10963125	0.88[EUR][1000 genomes]
rs10963126	0.82[EUR][1000 genomes]
rs10963127	0.81[EUR][1000 genomes]
rs10963139	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10963146	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11791273	0.88[EUR][1000 genomes]
rs11793646	0.84[AMR][1000 genomes]
rs2593405	0.83[EUR][1000 genomes]
rs2754330	0.82[EUR][1000 genomes]
rs34817792	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs55760530	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55885732	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs62559788	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7043190	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7851130	0.88[EUR][1000 genomes]
rs7851266	0.88[EUR][1000 genomes]
rs7851436	0.81[EUR][1000 genomes]
rs7866802	0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv613693	chr9:17147191-17710407	Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
2	nsv471287	chr9:17165698-17708814	Weak transcription Enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
3	nsv466269	chr9:17165698-17710407	Weak transcription ZNF genes & repeats Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Active TSS Flanking Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
4	nsv892671	chr9:17378776-17610211	Bivalent Enhancer Enhancers Weak transcription Strong transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
5	esv2422265	chr9:17396711-17598187	Flanking Active TSS Weak transcription Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:17556000-17557800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
2	chr9:17556800-17557400	Enhancers	Fetal Stomach	stomach

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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