Variant report

Variant	rs346364
Chromosome Location	chr6:80638669-80638670
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:80637867..80639718-chr6:80655961..80657818,2	K562	blood:
2	chr6:80638236..80641054-chr6:80645863..80647445,2	K562	blood:
3	chr6:80637410..80640151-chr6:80643092..80644970,2	K562	blood:

Variant related genes	Relation type
ENSG00000118402	Chromatin interaction

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs151668	0.81[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs151670	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs163983	0.85[YRI][hapmap];1.00[AMR][1000 genomes]
rs184672	0.85[YRI][hapmap];0.83[AFR][1000 genomes]
rs239518	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs239519	0.82[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs239530	0.81[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs239531	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs343617	0.85[YRI][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs343619	0.85[YRI][hapmap];0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs343621	1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs343622	0.85[YRI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs343624	1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs343625	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs343626	0.81[YRI][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs343630	0.81[YRI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs343633	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs343634	0.83[YRI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs343690	1.00[AMR][1000 genomes]
rs343703	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs346365	0.81[YRI][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1028607	chr6:79853272-80767716	Enhancers Active TSS Genic enhancers Flanking Active TSS Strong transcription Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
2	nsv1032347	chr6:80284809-80694778	Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
3	esv3475140	chr6:80592690-80679283	Active TSS Flanking Bivalent TSS/Enh Enhancers Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
4	esv3475142	chr6:80592789-80679132	Weak transcription Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Active TSS Enhancers Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
5	nsv525646	chr6:80637239-80640847	Weak transcription Enhancers Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:80618400-80656000	Weak transcription	Aorta	Aorta
2	chr6:80622000-80643800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr6:80622000-80644200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr6:80622600-80639600	Weak transcription	HUES64 Cell Line	embryonic stem cell
5	chr6:80623400-80639000	Weak transcription	H1 Cell Line	embryonic stem cell
6	chr6:80624000-80643000	Weak transcription	NHDF-Ad	bronchial
7	chr6:80629200-80639800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
8	chr6:80630800-80639800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr6:80630800-80639800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr6:80631000-80653000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr6:80632000-80654800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
12	chr6:80633000-80639600	Weak transcription	HUES48 Cell Line	embryonic stem cell
13	chr6:80633000-80646400	Weak transcription	H9 Cell Line	embryonic stem cell
14	chr6:80634800-80651000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr6:80637400-80638800	Enhancers	Primary T cells from cord blood	blood
16	chr6:80637800-80641600	Enhancers	Dnd41	blood
17	chr6:80638400-80639800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
18	chr6:80638400-80651000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
19	chr6:80638600-80638800	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
20	chr6:80638600-80639200	Genic enhancers	Thymus	Thymus
21	chr6:80638600-80639400	Enhancers	Fetal Thymus	thymus

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