Variant report

Variant	rs34645698
Chromosome Location	chr7:147466116-147466117
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10280155	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11765619	0.86[EUR][1000 genomes]
rs1467331	0.87[ASN][1000 genomes]
rs2140812	0.90[ASN][1000 genomes]
rs58676850	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73475064	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73475065	0.91[AFR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7785603	0.89[EUR][1000 genomes]
rs7800200	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs851651	0.89[EUR][1000 genomes]
rs851652	0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933973	chr7:147438206-147549993	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:147461200-147469600	Weak transcription	Brain Cingulate Gyrus	brain
2	chr7:147461200-147472800	Weak transcription	Brain Angular Gyrus	brain
3	chr7:147461600-147466600	Weak transcription	Brain Substantia Nigra	brain
4	chr7:147465800-147466800	Enhancers	Brain Hippocampus Middle	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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