Variant report

Variant	rs34646795
Chromosome Location	chr3:23348776-23348777
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:23333702..23336217-chr3:23346722..23349222,2	MCF-7	breast:

Extended variants
information (count: 76 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:70)

rs_ID	r²[population]
rs10510537	0.98[ASN][1000 genomes]
rs13059557	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13063183	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13063986	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13070865	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13076527	0.83[AFR][1000 genomes]
rs13077333	0.80[AFR][1000 genomes];0.95[AMR][1000 genomes];0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13083654	0.95[AMR][1000 genomes];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13084327	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13087234	0.95[AMR][1000 genomes];0.80[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13089963	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13090303	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs13092830	0.87[AFR][1000 genomes]
rs13095736	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs13095960	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13098494	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1495132	0.85[ASN][1000 genomes]
rs17012834	0.90[ASN][1000 genomes]
rs17012844	0.88[ASN][1000 genomes]
rs17012852	0.90[ASN][1000 genomes]
rs17012861	0.89[ASN][1000 genomes]
rs17012897	0.95[AMR][1000 genomes];0.80[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17012927	0.98[ASN][1000 genomes]
rs17012943	0.98[ASN][1000 genomes]
rs17012959	1.00[ASN][1000 genomes]
rs17012969	1.00[ASN][1000 genomes]
rs17012988	1.00[ASN][1000 genomes]
rs17012998	0.98[ASN][1000 genomes]
rs17013023	0.97[ASN][1000 genomes]
rs17013026	0.97[ASN][1000 genomes]
rs17013029	0.94[ASN][1000 genomes]
rs17013035	0.97[ASN][1000 genomes]
rs17013049	0.97[ASN][1000 genomes]
rs17013104	0.87[ASN][1000 genomes]
rs17013116	0.87[ASN][1000 genomes]
rs17013125	0.87[ASN][1000 genomes]
rs17013128	0.87[ASN][1000 genomes]
rs17013152	0.87[ASN][1000 genomes]
rs17013241	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs17345745	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17404982	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2014132	0.83[ASN][1000 genomes]
rs2291720	0.83[ASN][1000 genomes]
rs34108997	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs34239585	0.80[AFR][1000 genomes];0.95[AMR][1000 genomes];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs34259979	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs34443476	0.81[EUR][1000 genomes]
rs34896901	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs34928302	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs34972244	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs35024744	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs35038414	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs35059447	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs35098118	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs35236373	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs35320722	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs35402533	0.87[AFR][1000 genomes]
rs35743404	0.80[AFR][1000 genomes];0.95[AMR][1000 genomes];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs36004369	0.95[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs36123653	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs58844120	0.88[ASN][1000 genomes]
rs61707213	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs71322175	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs71322180	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs71322181	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs71322182	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs71322186	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs71322188	0.88[EUR][1000 genomes]
rs9857217	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9873329	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014701	chr3:23257658-23416094	Weak transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv589947	chr3:23277838-23403943	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv1002823	chr3:23277838-23623083	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv589948	chr3:23287141-23390221	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv1004417	chr3:23318797-23389422	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv967177	chr3:23337450-23350050	Weak transcription Enhancers Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:23337600-23358400	Weak transcription	Primary B cells from peripheral blood	blood
2	chr3:23343200-23350200	Weak transcription	Psoas Muscle	Psoas
3	chr3:23343800-23355200	Weak transcription	Aorta	Aorta
4	chr3:23344600-23353400	Weak transcription	Left Ventricle	heart
5	chr3:23344600-23356600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr3:23345000-23350200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr3:23345600-23354000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr3:23345800-23356400	Weak transcription	NHDF-Ad	bronchial
9	chr3:23345800-23358600	Weak transcription	Fetal Stomach	stomach
10	chr3:23346400-23354400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr3:23346800-23353600	Weak transcription	HSMM	muscle
12	chr3:23346800-23354000	Weak transcription	Muscle Satellite Cultured Cells	--
13	chr3:23347000-23356400	Weak transcription	Adipose Nuclei	Adipose
14	chr3:23347000-23357200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr3:23347200-23353600	Weak transcription	Brain Inferior Temporal Lobe	brain
16	chr3:23347400-23350200	Weak transcription	HMEC	breast
17	chr3:23347400-23351200	Weak transcription	Primary B cells from cord blood	blood
18	chr3:23347800-23350400	Weak transcription	HSMMtube	muscle
19	chr3:23348000-23354200	Weak transcription	Skeletal Muscle Male	skeletal muscle
20	chr3:23348200-23356600	Weak transcription	Brain Hippocampus Middle	brain

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