Variant report

Variant	rs34654084
Chromosome Location	chr3:139048970-139048971
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:138662930..138665142-chr3:139048462..139050899,2	K562	blood:
2	chr3:139007076..139010029-chr3:139046748..139049075,2	K562	blood:
3	chr3:138654402..138658110-chr3:139047575..139051045,3	K562	blood:
4	chr3:138660642..138664430-chr3:139046822..139050119,4	K562	blood:
5	chr3:139048508..139050684-chr3:139059942..139062793,2	K562	blood:
6	chr3:138999018..139001982-chr3:139047659..139049636,3	K562	blood:
7	chr3:139006838..139007842-chr3:139048045..139049098,4	MCF-7	breast:
8	chr3:138829485..138831006-chr3:139046744..139049335,2	K562	blood:
9	chr3:138831386..138833720-chr3:139046881..139049087,2	K562	blood:

No data

No data

No data

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs12695695	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs13325144	0.83[AFR][1000 genomes]
rs28545366	1.00[AFR][1000 genomes]
rs35586329	1.00[AFR][1000 genomes]
rs71314515	0.83[AFR][1000 genomes]
rs9820144	1.00[AFR][1000 genomes]
rs9839834	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9846449	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9874641	0.89[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1005158	chr3:139001736-139073011	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv877543	chr3:139021139-139327261	Enhancers Strong transcription Active TSS Bivalent/Poised TSS Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
3	nsv4034	chr3:139034976-139080133	Active TSS Genic enhancers Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Weak transcription ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:139048200-139062400	Weak transcription	Right Atrium	heart
2	chr3:139048400-139049000	Enhancers	K562	blood
3	chr3:139048400-139049200	Bivalent Enhancer	Fetal Muscle Trunk	muscle
4	chr3:139048600-139049000	Bivalent/Poised TSS	Primary T regulatory cells fromperipheralblood	blood
5	chr3:139048600-139049800	Enhancers	Brain Cingulate Gyrus	brain
6	chr3:139048800-139049800	Enhancers	Brain Inferior Temporal Lobe	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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