Variant report

Variant	rs34654898
Chromosome Location	chr7:6422960-6422961
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:6421014..6424482-chr7:6430347..6433930,4	K562	blood:
2	chr7:6386938..6388709-chr7:6422840..6425617,3	MCF-7	breast:
3	chr7:6421014..6427961-chr7:6430347..6436546,11	K562	blood:
4	chr7:6412400..6417963-chr7:6418207..6425853,16	MCF-7	breast:
5	chr7:6421913..6424520-chr7:6475642..6477904,2	MCF-7	breast:
6	chr7:6421340..6424107-chr7:6434003..6435791,2	MCF-7	breast:
7	chr7:6421413..6423710-chr7:6424469..6426937,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000178397	Chromatin interaction
ENSG00000136238	Chromatin interaction

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs34301604	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs34950525	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35702073	1.00[AMR][1000 genomes]
rs62441276	1.00[AFR][1000 genomes]
rs73059357	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948912	chr7:5803903-6623553	Active TSS Flanking Active TSS Weak transcription Strong transcription Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	123 gene(s)	inside rSNPs	diseases
2	nsv1034060	chr7:5814823-6745710	Bivalent Enhancer Active TSS Weak transcription Flanking Active TSS Enhancers Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	138 gene(s)	inside rSNPs	diseases
3	nsv538711	chr7:5814823-6745710	Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Genic enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	138 gene(s)	inside rSNPs	diseases
4	nsv1028242	chr7:5819084-6645024	Flanking Active TSS Weak transcription Enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	127 gene(s)	inside rSNPs	diseases
5	nsv538712	chr7:5819084-6645024	Weak transcription Active TSS Genic enhancers Enhancers Bivalent Enhancer Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	127 gene(s)	inside rSNPs	diseases
6	nsv949531	chr7:5949371-6753694	Strong transcription Bivalent Enhancer Bivalent/Poised TSS Enhancers Weak transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	129 gene(s)	inside rSNPs	diseases
7	nsv1021037	chr7:6070792-6426966	Strong transcription Enhancers Flanking Active TSS Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
8	nsv538713	chr7:6070792-6426966	Weak transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
9	nsv530989	chr7:6176729-6438197	Strong transcription Enhancers Weak transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
10	nsv1020236	chr7:6248930-6690377	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
11	nsv497874	chr7:6296768-6614902	Transcr. at gene 5' and 3' Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
12	nsv605999	chr7:6396719-6472881	Weak transcription Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
13	nsv967451	chr7:6417630-6427589	Weak transcription Genic enhancers Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:6415600-6423800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr7:6415800-6427400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr7:6416000-6424800	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr7:6416600-6423800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr7:6417000-6427400	Weak transcription	Thymus	Thymus
6	chr7:6417200-6426400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr7:6417200-6435400	Weak transcription	Fetal Brain Male	brain
8	chr7:6417600-6423000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
9	chr7:6417800-6423800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr7:6417800-6423800	Weak transcription	Fetal Lung	lung
11	chr7:6417800-6424800	Weak transcription	Brain Germinal Matrix	brain
12	chr7:6417800-6425400	Weak transcription	Fetal Brain Female	brain
13	chr7:6418600-6423800	Enhancers	Primary B cells from peripheral blood	blood
14	chr7:6418600-6425200	Enhancers	Primary T helper cells fromperipheralblood	blood
15	chr7:6419000-6423800	Genic enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr7:6419000-6427000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
17	chr7:6419200-6426200	Enhancers	Adipose Nuclei	Adipose
18	chr7:6419400-6423200	Genic enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr7:6419400-6426000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
20	chr7:6419400-6426400	Enhancers	Primary T cells fromperipheralblood	blood
21	chr7:6419600-6423200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
22	chr7:6419600-6423600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
23	chr7:6419600-6423800	Genic enhancers	Hela-S3	cervix
24	chr7:6419600-6424800	Enhancers	Stomach Mucosa	stomach
25	chr7:6419600-6425800	Enhancers	Brain Anterior Caudate	brain
26	chr7:6419600-6426000	Enhancers	Colon Smooth Muscle	Colon
27	chr7:6419600-6426200	Enhancers	Rectal Mucosa Donor 31	rectum
28	chr7:6419600-6426600	Enhancers	Primary monocytes fromperipheralblood	blood
29	chr7:6419800-6423800	Weak transcription	Fetal Intestine Large	intestine
30	chr7:6419800-6423800	Weak transcription	Placenta Amnion	Placenta Amnion
31	chr7:6419800-6424200	Enhancers	Brain Cingulate Gyrus	brain
32	chr7:6419800-6424600	Weak transcription	HSMMtube	muscle
33	chr7:6419800-6425000	Weak transcription	Aorta	Aorta
34	chr7:6419800-6425000	Weak transcription	Fetal Kidney	kidney
35	chr7:6420000-6423200	Enhancers	Breast Myoepithelial Primary Cells	Breast
36	chr7:6420000-6423800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
37	chr7:6420000-6426000	Enhancers	Primary T helper cells PMA-I stimulated	--
38	chr7:6420200-6424800	Weak transcription	Fetal Heart	heart
39	chr7:6420400-6423800	Weak transcription	NH-A	brain
40	chr7:6420400-6423800	Weak transcription	Osteobl	bone
41	chr7:6420600-6423800	Weak transcription	Rectal Smooth Muscle	rectum
42	chr7:6420600-6423800	Weak transcription	Stomach Smooth Muscle	stomach
43	chr7:6420600-6423800	Enhancers	K562	blood
44	chr7:6420600-6426000	Enhancers	Placenta	Placenta
45	chr7:6420600-6426000	Enhancers	Skeletal Muscle Female	skeletal muscle
46	chr7:6420800-6423000	Flanking Active TSS	GM12878-XiMat	blood
47	chr7:6421000-6423800	Genic enhancers	NHEK	skin
48	chr7:6421200-6423000	Enhancers	Primary T cells from cord blood	blood
49	chr7:6421200-6423000	Enhancers	Primary hematopoietic stem cells	blood
50	chr7:6421200-6423000	Enhancers	Ovary	ovary

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