Variant report

Variant	rs34658454
Chromosome Location	chr2:37660590-37660591
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10165491	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10181043	0.81[ASN][1000 genomes]
rs1024811	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12475384	0.82[ASN][1000 genomes]
rs12987182	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13002028	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13014680	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13019075	0.89[ASN][1000 genomes]
rs13035644	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17020669	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2216116	0.85[ASN][1000 genomes]
rs2373002	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2373106	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2373107	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs34105303	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34652606	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4490163	0.80[ASN][1000 genomes]
rs4549068	0.86[AMR][1000 genomes]
rs4670705	0.90[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs4670713	0.80[ASN][1000 genomes]
rs4670719	0.86[ASN][1000 genomes]
rs62133308	0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6732454	0.90[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs6754566	0.90[EUR][1000 genomes]
rs71437580	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833814	chr2:37643132-37840247	Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:37660000-37661600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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