Variant report
Variant | rs34668393 |
---|---|
Chromosome Location | chr7:58028655-58028656 |
allele | A/C/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
No data |
No data |
No data |
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No data |
rs_ID | r2[population] |
---|---|
rs12666270 | 0.86[EUR][1000 genomes] |
rs13239262 | 0.90[AFR][1000 genomes] |
rs1816636 | 0.87[EUR][1000 genomes] |
rs1821840 | 1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes] |
rs2196625 | 0.84[EUR][1000 genomes] |
rs2196629 | 0.88[EUR][1000 genomes] |
rs2217990 | 0.80[AFR][1000 genomes];0.80[AMR][1000 genomes];0.81[EUR][1000 genomes] |
rs2217992 | 0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes] |
rs2315742 | 0.90[AFR][1000 genomes] |
rs2340128 | 0.94[EUR][1000 genomes] |
rs2340129 | 0.92[AMR][1000 genomes];0.92[EUR][1000 genomes] |
rs2340580 | 0.91[AFR][1000 genomes];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes] |
rs34440380 | 0.80[AMR][1000 genomes] |
rs34563824 | 0.91[EUR][1000 genomes] |
rs35196040 | 0.80[AFR][1000 genomes];0.83[AMR][1000 genomes] |
rs35358987 | 0.86[AMR][1000 genomes];0.81[EUR][1000 genomes] |
rs35539125 | 0.81[EUR][1000 genomes] |
rs35732386 | 0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes] |
rs35871520 | 0.81[AMR][1000 genomes];0.93[EUR][1000 genomes] |
rs36079292 | 0.90[AFR][1000 genomes];0.84[EUR][1000 genomes] |
rs36199280 | 1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes] |
rs36200549 | 1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.90[EUR][1000 genomes] |
rs62459428 | 0.85[AFR][1000 genomes] |
rs62459452 | 0.85[AFR][1000 genomes] |
rs62459490 | 0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.85[EUR][1000 genomes] |
rs62461575 | 0.81[EUR][1000 genomes] |
rs62461584 | 0.90[AFR][1000 genomes];0.82[EUR][1000 genomes] |
rs62463290 | 0.91[AFR][1000 genomes];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes] |
rs62463326 | 0.85[AMR][1000 genomes] |
rs71548923 | 0.86[EUR][1000 genomes] |
rs8185403 | 0.93[EUR][1000 genomes] |
rs8185631 | 1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes] |
rs8188443 | 0.84[EUR][1000 genomes] |
rs9918585 | 0.90[AFR][1000 genomes];0.85[EUR][1000 genomes] |
rs9918595 | 0.81[EUR][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv433384 | chr7:57633285-58029051 | Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 22 gene(s) | inside rSNPs | diseases |
2 | nsv607105 | chr7:57923927-58051868 | ZNF genes & repeats Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers | Chromatin interactive region | n/a | inside rSNPs | diseases |
3 | nsv607106 | chr7:57923927-58054092 | ZNF genes & repeats Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
4 | esv13519 | chr7:57940278-58054218 | Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh | Chromatin interactive region | n/a | inside rSNPs | diseases |
5 | nsv821066 | chr7:57940278-58054218 | ZNF genes & repeats Enhancers Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer | Chromatin interactive region | n/a | inside rSNPs | diseases |
6 | nsv607107 | chr7:57940293-58051868 | ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer | Chromatin interactive region | n/a | inside rSNPs | diseases |
7 | nsv607108 | chr7:57940293-58054092 | ZNF genes & repeats Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
8 | nsv607112 | chr7:57992609-58051868 | Bivalent/Poised TSS ZNF genes & repeats Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer | Chromatin interactive region | n/a | inside rSNPs | diseases |
9 | esv3325171 | chr7:58024410-58029608 | ZNF genes & repeats Weak transcription | n/a | n/a | inside rSNPs | n/a |
10 | esv3431035 | chr7:58025210-58054331 | ZNF genes & repeats Active TSS Weak transcription Enhancers | Chromatin interactive region | n/a | inside rSNPs | n/a |
11 | esv3363495 | chr7:58025310-58032208 | ZNF genes & repeats Weak transcription | n/a | n/a | inside rSNPs | n/a |
12 | esv3412151 | chr7:58025310-58032308 | ZNF genes & repeats Weak transcription | n/a | n/a | inside rSNPs | n/a |
13 | esv3382127 | chr7:58025310-58054331 | Weak transcription ZNF genes & repeats Enhancers Active TSS | Chromatin interactive region | n/a | inside rSNPs | n/a |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr7:58026400-58036600 | ZNF genes & repeats | iPS-20b Cell Line | embryonic stem cell |
2 | chr7:58026400-58042800 | ZNF genes & repeats | HUES64 Cell Line | embryonic stem cell |
3 | chr7:58026400-58043000 | ZNF genes & repeats | hESC Derived CD184+ Endoderm Cultured Cells | ES cell derived |