Variant report

Variant	rs34671862
Chromosome Location	chr15:56203753-56203754
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:56202601..56204627-chr15:56205006..56206876,2	MCF-7	breast:
2	chr15:56199692..56201562-chr15:56202025..56204154,2	MCF-7	breast:

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs12916104	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1912394	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1912399	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1912409	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2414450	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2438129	0.80[ASN][1000 genomes]
rs62043800	0.81[ASN][1000 genomes]
rs8027843	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9806179	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv457157	chr15:55722213-56255774	Flanking Active TSS Enhancers Active TSS Strong transcription Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv569539	chr15:55722213-56255774	Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
3	nsv569542	chr15:56185262-56210929	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
4	nsv528617	chr15:56202069-56207983	Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Strong transcription Weak transcription Active TSS Genic enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:56176000-56216200	Weak transcription	Fetal Intestine Small	intestine
2	chr15:56188400-56207800	Weak transcription	Primary T cells from cord blood	blood
3	chr15:56188600-56218400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr15:56190000-56220000	Weak transcription	Pancreas	Pancrea
5	chr15:56190200-56221200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr15:56190400-56219800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
7	chr15:56192400-56207800	Weak transcription	Liver	Liver
8	chr15:56192600-56209000	Weak transcription	Cortex derived primary cultured neurospheres	brain
9	chr15:56199400-56203800	Flanking Active TSS	A549	lung
10	chr15:56200200-56208600	Weak transcription	Stomach Smooth Muscle	stomach
11	chr15:56200200-56213200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr15:56200400-56209000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr15:56200800-56218000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
14	chr15:56201000-56230000	Weak transcription	Fetal Intestine Large	intestine
15	chr15:56201200-56217200	Weak transcription	Primary neutrophils fromperipheralblood	blood
16	chr15:56201800-56205800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr15:56202000-56207000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr15:56202200-56204800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr15:56202200-56204800	Weak transcription	NH-A	brain
20	chr15:56202200-56205000	Weak transcription	NHLF	lung
21	chr15:56202200-56207800	Weak transcription	Primary hematopoietic stem cells	blood
22	chr15:56202600-56204400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr15:56202600-56204800	Weak transcription	Hela-S3	cervix
24	chr15:56202800-56204800	Weak transcription	NHDF-Ad	bronchial
25	chr15:56202800-56204800	Weak transcription	Osteobl	bone
26	chr15:56203200-56203800	Enhancers	Skeletal Muscle Male	skeletal muscle
27	chr15:56203600-56203800	Enhancers	Muscle Satellite Cultured Cells	--
28	chr15:56203600-56204200	Active TSS	Psoas Muscle	Psoas
29	chr15:56203600-56204600	Weak transcription	HSMMtube	muscle
30	chr15:56203600-56204600	Weak transcription	NHEK	skin
31	chr15:56203600-56204800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
32	chr15:56203600-56204800	Weak transcription	HMEC	breast
33	chr15:56203600-56204800	Strong transcription	HSMM	muscle
34	chr15:56203600-56205000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
35	chr15:56203600-56205000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
36	chr15:56203600-56205200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
37	chr15:56203600-56205600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
38	chr15:56203600-56207400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
39	chr15:56203600-56209600	Active TSS	Skeletal Muscle Female	skeletal muscle

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