Variant report

Variant	rs34695855
Chromosome Location	chr4:87896458-87896459
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:87894083..87901163-chr4:87926378..87930735,13	K562	blood:
2	chr4:87895920..87900923-chr4:87925411..87930708,9	MCF-7	breast:
3	chr4:87894580..87900721-chr4:87926553..87929375,8	MCF-7	breast:
4	chr4:87876640..87879559-chr4:87894378..87897359,2	K562	blood:
5	chr4:87882295..87884551-chr4:87895406..87897794,3	K562	blood:
6	chr4:87858518..87860018-chr4:87894461..87896898,2	K562	blood:

Variant related genes	Relation type
ENSG00000172493	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs12651081	0.92[ASN][1000 genomes]
rs13102958	0.92[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs2053775	0.88[ASN][1000 genomes]
rs3109038	0.92[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs4274814	0.92[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs4536898	0.92[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs991852	0.92[AFR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1009937	chr4:87795314-88008345	Weak transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	42 gene(s)	inside rSNPs	diseases
2	nsv999176	chr4:87869996-88098136	Strong transcription Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
3	nsv998335	chr4:87869996-88104414	Flanking Active TSS Enhancers Weak transcription Strong transcription Genic enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
4	nsv1001017	chr4:87872160-88087003	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
5	nsv537166	chr4:87872160-88087003	Enhancers Weak transcription Genic enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:95 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:87868600-87898000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr4:87872600-87926200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
3	chr4:87881000-87897600	Weak transcription	Brain Angular Gyrus	brain
4	chr4:87882400-87898600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr4:87882600-87920200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
6	chr4:87882800-87912400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr4:87886600-87898600	Weak transcription	Pancreatic Islets	Pancreatic Islet
8	chr4:87888800-87898800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
9	chr4:87890200-87898600	Weak transcription	Primary B cells from peripheral blood	blood
10	chr4:87891600-87897600	Enhancers	iPS-15b Cell Line	embryonic stem cell
11	chr4:87892000-87900400	Enhancers	Primary hematopoietic stem cells short term culture	blood
12	chr4:87892200-87907000	Weak transcription	Brain Anterior Caudate	brain
13	chr4:87892400-87920600	Weak transcription	Stomach Smooth Muscle	stomach
14	chr4:87892600-87896600	Enhancers	Dnd41	blood
15	chr4:87892600-87898400	Weak transcription	Duodenum Smooth Muscle	Duodenum
16	chr4:87892800-87898600	Weak transcription	Brain Hippocampus Middle	brain
17	chr4:87892800-87909400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
18	chr4:87893200-87900200	Weak transcription	Esophagus	oesophagus
19	chr4:87893800-87896600	Enhancers	Primary monocytes fromperipheralblood	blood
20	chr4:87894200-87897800	Enhancers	Primary neutrophils fromperipheralblood	blood
21	chr4:87894200-87899000	Enhancers	Primary T helper cells PMA-I stimulated	--
22	chr4:87894400-87897400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
23	chr4:87894400-87897600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
24	chr4:87894400-87898400	Weak transcription	Osteobl	bone
25	chr4:87894400-87898600	Weak transcription	H9 Cell Line	embryonic stem cell
26	chr4:87894400-87898600	Weak transcription	Rectal Smooth Muscle	rectum
27	chr4:87894400-87911000	Weak transcription	Pancreas	Pancrea
28	chr4:87894600-87897200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
29	chr4:87894600-87897200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
30	chr4:87894600-87897200	Weak transcription	Placenta	Placenta
31	chr4:87894600-87897200	Weak transcription	HMEC	breast
32	chr4:87894600-87897400	Weak transcription	Psoas Muscle	Psoas
33	chr4:87894600-87897800	Weak transcription	Colonic Mucosa	Colon
34	chr4:87894600-87898000	Weak transcription	Hela-S3	cervix
35	chr4:87894600-87898400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
36	chr4:87894600-87898600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
37	chr4:87894600-87898600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
38	chr4:87894600-87898600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
39	chr4:87894600-87898600	Weak transcription	Left Ventricle	heart
40	chr4:87894600-87898600	Weak transcription	Ovary	ovary
41	chr4:87894600-87898600	Weak transcription	Right Atrium	heart
42	chr4:87894600-87898800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
43	chr4:87894600-87898800	Weak transcription	Spleen	Spleen
44	chr4:87894600-87899000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
45	chr4:87894600-87904200	Weak transcription	Primary T cells fromperipheralblood	blood
46	chr4:87894600-87915600	Weak transcription	Lung	lung
47	chr4:87894600-87921000	Weak transcription	Skeletal Muscle Female	skeletal muscle
48	chr4:87894800-87897400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
49	chr4:87894800-87898800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
50	chr4:87895000-87898400	Weak transcription	Colon Smooth Muscle	Colon

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