Variant report

Variant	rs34699252
Chromosome Location	chr4:143508527-143508528
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:143506127..143509971-chr4:143766689..143769613,3	MCF-7	breast:
2	chr4:143500805..143505474-chr4:143506198..143510194,5	MCF-7	breast:
3	chr4:143507813..143510472-chr4:143766283..143768831,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000109452	Chromatin interaction

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10000770	0.87[EUR][1000 genomes]
rs10006418	0.87[EUR][1000 genomes]
rs10015404	0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10020322	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10020865	0.82[ASN][1000 genomes]
rs11723318	0.85[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs13137056	0.84[ASN][1000 genomes]
rs13353799	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1348362	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1348363	0.87[EUR][1000 genomes]
rs28415364	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28485272	0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs28673920	0.87[EUR][1000 genomes]
rs28733118	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28758601	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34082059	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs34234953	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34393544	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs34626802	0.86[EUR][1000 genomes]
rs35255414	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35366693	0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs36101393	0.82[EUR][1000 genomes]
rs36142547	0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs60361448	0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs62330251	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62331862	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6834451	0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6849164	0.89[EUR][1000 genomes]
rs6856817	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv461660	chr4:143437219-143538179	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv595605	chr4:143437219-143538179	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:143489800-143519400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr4:143490800-143519200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
3	chr4:143493600-143510800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr4:143501400-143511000	Weak transcription	Primary hematopoietic stem cells	blood
5	chr4:143503800-143512400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr4:143503800-143514200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
7	chr4:143504000-143508600	Strong transcription	Primary T helper cells fromperipheralblood	blood
8	chr4:143504000-143511400	Weak transcription	Primary T cells from cord blood	blood
9	chr4:143505400-143508600	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
10	chr4:143506200-143508800	Strong transcription	Primary T helper cells PMA-I stimulated	--
11	chr4:143506200-143510200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
12	chr4:143506400-143518000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
13	chr4:143506800-143514400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
14	chr4:143507000-143510600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr4:143507400-143517000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr4:143507400-143520200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
17	chr4:143507600-143514000	Weak transcription	Primary T cells fromperipheralblood	blood
18	chr4:143507600-143519200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
19	chr4:143508200-143520000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood

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