Variant report

Variant	rs34702508
Chromosome Location	chr9:72473996-72473997
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11140630	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11140716	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11140750	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12379253	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13283032	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13284442	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13295978	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2871283	0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35822389	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7022971	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7027129	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7038189	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7469302	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs766002	0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7852049	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050920	chr9:72345297-72579301	Weak transcription Enhancers Strong transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv831611	chr9:72361905-72512134	Weak transcription Enhancers Genic enhancers Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
3	nsv893438	chr9:72363992-72720438	Weak transcription Enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
4	nsv831612	chr9:72473778-72634253	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:72442800-72480200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr9:72467600-72474600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr9:72468000-72474400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
4	chr9:72471000-72481800	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr9:72471600-72474000	Enhancers	Muscle Satellite Cultured Cells	--
6	chr9:72471600-72474000	Enhancers	HUVEC	blood vessel
7	chr9:72472000-72474600	Strong transcription	HUES48 Cell Line	embryonic stem cell
8	chr9:72472600-72474800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
9	chr9:72472600-72476000	Weak transcription	NH-A	brain
10	chr9:72472800-72474400	Strong transcription	HUES6 Cell Line	embryonic stem cell
11	chr9:72472800-72474600	Strong transcription	HUES64 Cell Line	embryonic stem cell
12	chr9:72472800-72476200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr9:72473000-72474000	ZNF genes & repeats	Pancreatic Islets	Pancreatic Islet
14	chr9:72473000-72475000	Strong transcription	iPS-15b Cell Line	embryonic stem cell
15	chr9:72473200-72474400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr9:72473200-72475400	Strong transcription	H1 Cell Line	embryonic stem cell
17	chr9:72473400-72474400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
18	chr9:72473400-72475800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr9:72473800-72474600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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