Variant report

Variant	rs34707035
Chromosome Location	chr15:77008425-77008426
allele	-/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:76997314..76998845-chr15:77007470..77009179,2	MCF-7	breast:

Extended variants
information (count: 148 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:123)

rs_ID	r²[population]
rs10444858	0.99[ASN][1000 genomes]
rs11072603	0.82[ASN][1000 genomes]
rs1116535	0.97[ASN][1000 genomes]
rs1117367	0.82[ASN][1000 genomes]
rs1125932	0.84[ASN][1000 genomes]
rs12148452	1.00[ASN][1000 genomes]
rs12148877	0.86[ASN][1000 genomes]
rs12437627	0.89[ASN][1000 genomes]
rs12437733	0.84[ASN][1000 genomes]
rs12438077	0.89[ASN][1000 genomes]
rs12438186	0.86[ASN][1000 genomes]
rs12438540	0.87[ASN][1000 genomes]
rs12440151	0.86[ASN][1000 genomes]
rs12440835	0.90[ASN][1000 genomes]
rs12441247	0.84[ASN][1000 genomes]
rs12441484	0.84[ASN][1000 genomes]
rs12441550	0.89[ASN][1000 genomes]
rs12443137	0.81[ASN][1000 genomes]
rs12591660	0.91[AFR][1000 genomes];0.82[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs12593871	0.89[ASN][1000 genomes]
rs12594556	0.83[ASN][1000 genomes]
rs12594577	0.84[ASN][1000 genomes]
rs12595313	1.00[ASN][1000 genomes]
rs12898430	0.82[ASN][1000 genomes]
rs12900494	0.86[ASN][1000 genomes]
rs12902174	0.89[ASN][1000 genomes]
rs12902452	0.86[ASN][1000 genomes]
rs12903553	0.80[ASN][1000 genomes]
rs12904198	0.84[ASN][1000 genomes]
rs12908421	0.88[ASN][1000 genomes]
rs12910293	0.84[ASN][1000 genomes]
rs12910382	0.89[ASN][1000 genomes]
rs12910734	0.84[ASN][1000 genomes]
rs12911174	0.84[ASN][1000 genomes]
rs12911902	0.89[ASN][1000 genomes]
rs12911987	0.93[ASN][1000 genomes]
rs12916573	1.00[AFR][1000 genomes]
rs12916869	0.82[ASN][1000 genomes]
rs1471780	0.97[ASN][1000 genomes]
rs17367297	0.83[ASN][1000 genomes]
rs1838048	0.87[ASN][1000 genomes]
rs1867197	0.86[ASN][1000 genomes]
rs1874944	0.89[ASN][1000 genomes]
rs1946650	0.89[ASN][1000 genomes]
rs2120107	0.82[ASN][1000 genomes]
rs2120108	0.90[ASN][1000 genomes]
rs2137307	0.83[ASN][1000 genomes]
rs2304920	1.00[ASN][1000 genomes]
rs2404602	0.83[ASN][1000 genomes]
rs2404733	0.93[ASN][1000 genomes]
rs2404736	0.90[ASN][1000 genomes]
rs2404737	0.90[ASN][1000 genomes]
rs2404740	0.81[ASN][1000 genomes]
rs2896954	0.81[ASN][1000 genomes]
rs3110382	0.82[ASN][1000 genomes]
rs34049670	0.84[ASN][1000 genomes]
rs34060246	1.00[ASN][1000 genomes]
rs34181263	0.86[ASN][1000 genomes]
rs34272342	0.97[ASN][1000 genomes]
rs34287706	0.87[ASN][1000 genomes]
rs34478400	0.86[ASN][1000 genomes]
rs34639578	0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs34924128	1.00[ASN][1000 genomes]
rs35077207	0.87[ASN][1000 genomes]
rs35138393	1.00[ASN][1000 genomes]
rs35170561	0.84[ASN][1000 genomes]
rs35195096	0.87[ASN][1000 genomes]
rs35395069	1.00[ASN][1000 genomes]
rs35498563	1.00[ASN][1000 genomes]
rs35557205	0.83[ASN][1000 genomes]
rs35561811	0.84[ASN][1000 genomes]
rs35566346	0.86[ASN][1000 genomes]
rs36070630	0.93[ASN][1000 genomes]
rs3816266	1.00[ASN][1000 genomes]
rs4383105	0.90[ASN][1000 genomes]
rs4442773	0.90[ASN][1000 genomes]
rs4525456	0.86[ASN][1000 genomes]
rs4641709	0.90[ASN][1000 genomes]
rs4886496	0.86[ASN][1000 genomes]
rs4886503	0.86[ASN][1000 genomes]
rs4886813	0.84[ASN][1000 genomes]
rs4886817	0.90[ASN][1000 genomes]
rs4886818	0.81[ASN][1000 genomes]
rs4886822	0.86[ASN][1000 genomes]
rs4886824	0.98[ASN][1000 genomes]
rs4886825	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4886829	0.84[ASN][1000 genomes]
rs55676827	1.00[ASN][1000 genomes]
rs55864032	0.84[ASN][1000 genomes]
rs56193230	0.87[ASN][1000 genomes]
rs56351018	0.84[ASN][1000 genomes]
rs57178708	0.86[ASN][1000 genomes]
rs58361452	1.00[ASN][1000 genomes]
rs58511211	0.84[ASN][1000 genomes]
rs58973160	1.00[ASN][1000 genomes]
rs59088060	0.89[ASN][1000 genomes]
rs60658665	0.90[ASN][1000 genomes]
rs60912217	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6495206	0.82[ASN][1000 genomes]
rs66754747	0.84[ASN][1000 genomes]
rs66866130	0.84[ASN][1000 genomes]
rs67010831	1.00[ASN][1000 genomes]
rs67204011	0.89[ASN][1000 genomes]
rs67570291	1.00[ASN][1000 genomes]
rs71405216	0.86[ASN][1000 genomes]
rs71405222	0.95[ASN][1000 genomes]
rs71405223	1.00[ASN][1000 genomes]
rs71405225	0.85[ASN][1000 genomes]
rs7163397	0.87[ASN][1000 genomes]
rs7167613	0.84[ASN][1000 genomes]
rs7169394	0.86[ASN][1000 genomes]
rs7174673	0.84[ASN][1000 genomes]
rs7174953	0.86[ASN][1000 genomes]
rs72738889	1.00[ASN][1000 genomes]
rs7342603	1.00[ASN][1000 genomes]
rs7350777	1.00[ASN][1000 genomes]
rs7495566	0.92[ASN][1000 genomes]
rs8024476	1.00[ASN][1000 genomes]
rs8028294	0.84[ASN][1000 genomes]
rs8036703	0.93[ASN][1000 genomes]
rs8037005	0.93[ASN][1000 genomes]
rs8043474	1.00[ASN][1000 genomes]
rs9646213	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:25 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv542439	chr15:76762161-77196336	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	9 gene(s)	inside rSNPs	diseases
2	esv3440794	chr15:76764595-77571114	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
3	nsv904400	chr15:76772062-77085283	Strong transcription Weak transcription Genic enhancers ZNF genes & repeats Enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
4	nsv1053924	chr15:76803849-77089079	Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
5	nsv904401	chr15:76816015-77085283	Strong transcription Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
6	nsv1042089	chr15:76855098-77016127	Weak transcription Enhancers ZNF genes & repeats Genic enhancers Strong transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases
7	esv2830013	chr15:76863023-77176158	Weak transcription ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
8	nsv1039269	chr15:76863437-77057021	Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
9	nsv904404	chr15:76869929-77033934	Strong transcription ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	3 gene(s)	inside rSNPs	diseases
10	nsv904405	chr15:76869929-77047915	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
11	nsv904406	chr15:76869929-77085283	Weak transcription Strong transcription ZNF genes & repeats Enhancers Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
12	nsv904407	chr15:76869929-77121196	Weak transcription Strong transcription Active TSS ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
13	nsv904408	chr15:76884127-77085283	Enhancers Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
14	nsv1046858	chr15:76892097-77020971	Weak transcription Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
15	nsv542440	chr15:76892097-77020971	Weak transcription ZNF genes & repeats Strong transcription Enhancers Genic enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
16	nsv1043066	chr15:76892097-77057021	Weak transcription ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
17	nsv542441	chr15:76892097-77057021	Weak transcription ZNF genes & repeats Strong transcription Enhancers Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
18	nsv1046137	chr15:76892097-77196336	ZNF genes & repeats Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
19	nsv542442	chr15:76892097-77196336	ZNF genes & repeats Strong transcription Weak transcription Enhancers Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
20	nsv904409	chr15:76893186-77033934	Strong transcription ZNF genes & repeats Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
21	nsv904410	chr15:76893186-77047915	ZNF genes & repeats Enhancers Strong transcription Active TSS Genic enhancers Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
22	nsv904411	chr15:76893186-77085283	Weak transcription ZNF genes & repeats Strong transcription Enhancers Genic enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
23	nsv904412	chr15:76910031-77085283	Weak transcription ZNF genes & repeats Strong transcription Enhancers Genic enhancers Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
24	nsv457206	chr15:76971456-77121196	Strong transcription Weak transcription ZNF genes & repeats Active TSS Enhancers Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
25	nsv570110	chr15:76971456-77121196	Weak transcription Strong transcription ZNF genes & repeats Enhancers Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:70 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:76989600-77055800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
2	chr15:76990200-77025200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
3	chr15:76990400-77019000	Weak transcription	Fetal Kidney	kidney
4	chr15:76991000-77020400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr15:76992400-77056200	Weak transcription	Colon Smooth Muscle	Colon
6	chr15:76992400-77056200	Weak transcription	Rectal Mucosa Donor 31	rectum
7	chr15:76992600-77017200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr15:76992800-77017200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
9	chr15:76992800-77056000	Weak transcription	Right Ventricle	heart
10	chr15:76993000-77009200	Weak transcription	Brain Anterior Caudate	brain
11	chr15:76993000-77010200	Weak transcription	Brain Inferior Temporal Lobe	brain
12	chr15:76993000-77017600	Weak transcription	Primary T cells fromperipheralblood	blood
13	chr15:76993000-77017800	Weak transcription	Duodenum Mucosa	Duodenum
14	chr15:76993000-77020200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
15	chr15:76993000-77024800	Weak transcription	Gastric	stomach
16	chr15:76993000-77024800	Weak transcription	Rectal Mucosa Donor 29	rectum
17	chr15:76993000-77024800	Weak transcription	Rectal Smooth Muscle	rectum
18	chr15:76993000-77025000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr15:76993000-77025000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
20	chr15:76993200-77020200	Weak transcription	Brain Hippocampus Middle	brain
21	chr15:76993200-77056200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr15:76994200-77056000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
23	chr15:76994800-77019000	Weak transcription	Placenta	Placenta
24	chr15:76994800-77020000	Weak transcription	Skeletal Muscle Female	skeletal muscle
25	chr15:76995800-77020400	Weak transcription	Primary T helper cells PMA-I stimulated	--
26	chr15:76996000-77017600	Weak transcription	Primary B cells from cord blood	blood
27	chr15:76996000-77025000	Weak transcription	Left Ventricle	heart
28	chr15:77006200-77011400	Weak transcription	Psoas Muscle	Psoas
29	chr15:77006400-77008800	Strong transcription	Primary T cells from cord blood	blood
30	chr15:77006400-77011600	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
31	chr15:77006800-77008600	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
32	chr15:77006800-77008600	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
33	chr15:77007000-77008600	Strong transcription	Cortex derived primary cultured neurospheres	brain
34	chr15:77007000-77008600	Weak transcription	Colonic Mucosa	Colon
35	chr15:77007000-77017200	Weak transcription	Primary T helper cells fromperipheralblood	blood
36	chr15:77007000-77020200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
37	chr15:77007000-77025000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
38	chr15:77007400-77008600	ZNF genes & repeats	IMR90 fetal lung fibroblasts Cell Line	lung
39	chr15:77007400-77008600	ZNF genes & repeats	Pancreas	Pancrea
40	chr15:77007400-77008800	Strong transcription	Liver	Liver
41	chr15:77007400-77008800	ZNF genes & repeats	Brain Germinal Matrix	brain
42	chr15:77007400-77008800	ZNF genes & repeats	Fetal Intestine Small	intestine
43	chr15:77007400-77008800	ZNF genes & repeats	Fetal Stomach	stomach
44	chr15:77007600-77008600	ZNF genes & repeats	Primary hematopoietic stem cells	blood
45	chr15:77007600-77008800	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
46	chr15:77007600-77008800	ZNF genes & repeats	Fetal Brain Male	brain
47	chr15:77007600-77008800	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
48	chr15:77007600-77010000	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
49	chr15:77007600-77029800	Weak transcription	Brain Angular Gyrus	brain
50	chr15:77007800-77008600	ZNF genes & repeats	Lung	lung

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