Variant report

Variant	rs34709110
Chromosome Location	chr14:56082663-56082664
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:56073582..56076545-chr14:56082600..56084449,2	MCF-7	breast:

Extended variants
information (count: 98 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:90)

rs_ID	r²[population]
rs10444721	0.89[ASN][1000 genomes]
rs10483644	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10483649	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10483651	0.89[ASN][1000 genomes]
rs12432344	0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12432588	0.89[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs12432887	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12433592	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12434609	0.91[ASN][1000 genomes]
rs12434624	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12434660	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12434799	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12435643	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12587700	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12587705	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12587735	0.89[ASN][1000 genomes]
rs12588172	0.82[ASN][1000 genomes]
rs12588185	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12589864	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12589867	0.97[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs12590388	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12590936	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12882850	0.80[ASN][1000 genomes]
rs12885864	0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12888809	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12891129	0.90[ASN][1000 genomes]
rs12893162	0.89[ASN][1000 genomes]
rs12895070	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12895366	0.90[ASN][1000 genomes]
rs12897227	0.81[ASN][1000 genomes]
rs17128610	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs17128614	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs17128655	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17128657	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17128677	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17128684	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17128690	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17253737	0.90[ASN][1000 genomes]
rs17684916	0.92[ASN][1000 genomes]
rs17684959	0.82[ASN][1000 genomes]
rs17685650	0.89[ASN][1000 genomes]
rs1951887	0.92[ASN][1000 genomes]
rs1951889	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1951890	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2093800	0.81[ASN][1000 genomes]
rs2252189	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2274076	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2274078	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2274079	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2296183	0.89[ASN][1000 genomes]
rs2341889	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs28458791	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs28581272	0.86[ASN][1000 genomes]
rs28703642	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs34023572	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs34111199	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34118806	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs34133022	0.90[ASN][1000 genomes]
rs34184813	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs34408323	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34548095	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs34697059	0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs34706911	0.92[ASN][1000 genomes]
rs34853759	0.90[ASN][1000 genomes]
rs34931260	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs34982220	0.90[ASN][1000 genomes]
rs35047443	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs35094494	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35420484	0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs35451981	0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs35531912	0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs35535838	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs35560341	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs35790844	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs55760841	0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs55927221	0.90[ASN][1000 genomes]
rs56229542	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs60233569	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61381603	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6573053	0.87[ASN][1000 genomes]
rs6573054	0.90[ASN][1000 genomes]
rs7150285	0.89[ASN][1000 genomes]
rs7154548	0.81[ASN][1000 genomes]
rs7156566	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7158176	0.90[ASN][1000 genomes]
rs8003149	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs8006443	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs8007183	0.82[ASN][1000 genomes]
rs8008764	0.82[ASN][1000 genomes]
rs8015588	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv901960	chr14:55853724-56085130	Weak transcription Active TSS Flanking Active TSS Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
2	nsv901961	chr14:55853724-56101879	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
3	nsv901962	chr14:55862956-56101879	Enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
4	nsv901963	chr14:55871452-56085130	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
5	nsv901964	chr14:55871452-56101879	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
6	nsv1051564	chr14:55895610-56130788	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
7	nsv542103	chr14:55895610-56130788	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
8	nsv901965	chr14:55976428-56101879	Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:56048400-56086000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr14:56061000-56085400	Weak transcription	Fetal Kidney	kidney
3	chr14:56061000-56085400	Weak transcription	Rectal Smooth Muscle	rectum
4	chr14:56064200-56082800	Weak transcription	Stomach Smooth Muscle	stomach
5	chr14:56066600-56086200	Weak transcription	Fetal Intestine Small	intestine
6	chr14:56066600-56086200	Weak transcription	Gastric	stomach
7	chr14:56066800-56086200	Weak transcription	Fetal Stomach	stomach
8	chr14:56068600-56086200	Weak transcription	Spleen	Spleen
9	chr14:56068600-56086600	Weak transcription	Lung	lung
10	chr14:56069600-56086800	Weak transcription	Pancreas	Pancrea
11	chr14:56070400-56086200	Weak transcription	Aorta	Aorta
12	chr14:56070800-56083000	Weak transcription	Primary hematopoietic stem cells	blood
13	chr14:56070800-56085000	Weak transcription	Colon Smooth Muscle	Colon
14	chr14:56071000-56083600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
15	chr14:56071000-56086000	Weak transcription	Thymus	Thymus
16	chr14:56071800-56086200	Weak transcription	Pancreatic Islets	Pancreatic Islet
17	chr14:56072400-56086200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr14:56073200-56082800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
19	chr14:56074600-56084600	Weak transcription	Brain Inferior Temporal Lobe	brain
20	chr14:56074600-56086000	Weak transcription	Brain Angular Gyrus	brain
21	chr14:56076200-56086000	Weak transcription	Small Intestine	intestine
22	chr14:56076400-56085800	Weak transcription	Brain Cingulate Gyrus	brain
23	chr14:56076600-56082800	Weak transcription	Fetal Lung	lung
24	chr14:56076600-56083200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
25	chr14:56076600-56083400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
26	chr14:56076600-56083600	Weak transcription	Brain Anterior Caudate	brain
27	chr14:56076600-56085800	Weak transcription	Ovary	ovary
28	chr14:56076600-56086000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
29	chr14:56076600-56086200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
30	chr14:56076800-56082800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
31	chr14:56077000-56082800	Weak transcription	NHEK	skin
32	chr14:56077000-56083200	Weak transcription	NH-A	brain
33	chr14:56077000-56083400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
34	chr14:56077000-56085000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
35	chr14:56077000-56085000	Weak transcription	Right Ventricle	heart
36	chr14:56077000-56085600	Weak transcription	Brain Substantia Nigra	brain
37	chr14:56077000-56085800	Weak transcription	H9 Cell Line	embryonic stem cell
38	chr14:56077000-56086000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
39	chr14:56077000-56086200	Weak transcription	NHLF	lung
40	chr14:56077200-56082800	Weak transcription	Osteobl	bone
41	chr14:56077200-56083000	Weak transcription	HUVEC	blood vessel
42	chr14:56077200-56084400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
43	chr14:56077800-56087800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
44	chr14:56077800-56092000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
45	chr14:56078200-56086000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
46	chr14:56078600-56084200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
47	chr14:56078600-56084600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
48	chr14:56078600-56085400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
49	chr14:56078600-56148600	Weak transcription	Stomach Mucosa	stomach
50	chr14:56078800-56095400	Strong transcription	Primary T helper cells fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links