Variant report

Variant	rs34712361
Chromosome Location	chr13:50925317-50925318
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:50917522..50919059-chr13:50924878..50927218,2	K562	blood:

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs11842790	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12853498	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12855386	1.00[ASN][1000 genomes]
rs12867018	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12871645	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12874278	1.00[ASN][1000 genomes]
rs12874827	0.80[AFR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12876227	1.00[ASN][1000 genomes]
rs17074093	0.87[AFR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17074141	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17074143	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17074145	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17363026	0.96[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17363566	1.00[ASN][1000 genomes]
rs2066664	1.00[ASN][1000 genomes]
rs2066673	1.00[ASN][1000 genomes]
rs2066679	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3095158	0.87[ASN][1000 genomes]
rs3095160	0.87[ASN][1000 genomes]
rs3095164	0.87[ASN][1000 genomes]
rs3095165	0.87[ASN][1000 genomes]
rs3116594	0.87[ASN][1000 genomes]
rs3116595	0.87[ASN][1000 genomes]
rs3118648	0.87[ASN][1000 genomes]
rs3118649	0.87[ASN][1000 genomes]
rs3118650	0.87[ASN][1000 genomes]
rs34042295	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34357487	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34374535	1.00[ASN][1000 genomes]
rs34453016	1.00[ASN][1000 genomes]
rs34556868	1.00[ASN][1000 genomes]
rs34700115	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34972893	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35299189	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35383320	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35413012	1.00[ASN][1000 genomes]
rs35542898	1.00[ASN][1000 genomes]
rs35650342	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35902227	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35980102	1.00[ASN][1000 genomes]
rs67217502	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67964536	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs706603	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71428294	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71436217	1.00[ASN][1000 genomes]
rs71436218	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71436219	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71436220	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71436222	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7986582	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7990202	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs806315	1.00[ASN][1000 genomes]
rs806318	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1035151	chr13:50513535-51167850	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1254 gene(s)	inside rSNPs	diseases
2	esv2753964	chr13:50545399-51421199	Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1256 gene(s)	inside rSNPs	diseases
3	esv2753492	chr13:50550081-51461720	Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1256 gene(s)	inside rSNPs	diseases
4	esv2752608	chr13:50550099-51054499	Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1249 gene(s)	inside rSNPs	diseases
5	nsv983747	chr13:50920787-50927900	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:50915000-50928200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr13:50920800-50928200	Weak transcription	Rectal Mucosa Donor 31	rectum
3	chr13:50922800-50926000	Weak transcription	HepG2	liver

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