Variant report

Variant	rs34718165
Chromosome Location	chr7:138160273-138160274
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:138158061..138159634-chr7:138160119..138161798,2	MCF-7	breast:

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10279876	1.00[ASN][1000 genomes]
rs11763093	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11769924	0.81[EUR][1000 genomes]
rs11773577	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12707387	1.00[ASN][1000 genomes]
rs12707388	1.00[ASN][1000 genomes]
rs13230953	1.00[ASN][1000 genomes]
rs13231375	1.00[ASN][1000 genomes]
rs13242427	1.00[ASN][1000 genomes]
rs33935215	0.82[EUR][1000 genomes]
rs35558871	1.00[ASN][1000 genomes]
rs35674497	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55918517	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6467777	1.00[ASN][1000 genomes]
rs6467781	1.00[ASN][1000 genomes]
rs67586210	0.87[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6970145	1.00[ASN][1000 genomes]
rs73164647	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7782453	1.00[ASN][1000 genomes]
rs7799818	1.00[ASN][1000 genomes]
rs7803989	1.00[ASN][1000 genomes]
rs7811152	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34048	chr7:137724092-138213119	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
2	nsv831153	chr7:138078179-138265648	Weak transcription Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:68 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:138146800-138163200	Weak transcription	Aorta	Aorta
2	chr7:138147000-138161400	Weak transcription	Rectal Mucosa Donor 31	rectum
3	chr7:138147000-138162200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
4	chr7:138147000-138162400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr7:138147000-138165000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
6	chr7:138147200-138163200	Weak transcription	Fetal Thymus	thymus
7	chr7:138147200-138168400	Weak transcription	Fetal Muscle Leg	muscle
8	chr7:138147200-138183800	Weak transcription	Primary B cells from cord blood	blood
9	chr7:138147200-138189000	Weak transcription	Thymus	Thymus
10	chr7:138148200-138163000	Weak transcription	Primary monocytes fromperipheralblood	blood
11	chr7:138148200-138164200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr7:138149800-138188600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr7:138153600-138161400	Weak transcription	Duodenum Mucosa	Duodenum
14	chr7:138153800-138160600	Weak transcription	Brain Germinal Matrix	brain
15	chr7:138153800-138161800	Weak transcription	Small Intestine	intestine
16	chr7:138153800-138163200	Weak transcription	Left Ventricle	heart
17	chr7:138153800-138166200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
18	chr7:138153800-138184200	Weak transcription	Fetal Stomach	stomach
19	chr7:138154000-138161800	Weak transcription	Brain Angular Gyrus	brain
20	chr7:138154200-138161200	Weak transcription	Primary T helper cells fromperipheralblood	blood
21	chr7:138154800-138163800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
22	chr7:138154800-138167200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
23	chr7:138155200-138184200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
24	chr7:138155800-138161400	Weak transcription	Fetal Intestine Large	intestine
25	chr7:138155800-138162000	Weak transcription	Primary T helper cells PMA-I stimulated	--
26	chr7:138156000-138161400	Weak transcription	GM12878-XiMat	blood
27	chr7:138156000-138161600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
28	chr7:138156000-138162200	Weak transcription	Primary neutrophils fromperipheralblood	blood
29	chr7:138156000-138165200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
30	chr7:138156600-138160600	Enhancers	Fetal Heart	heart
31	chr7:138157000-138165200	Enhancers	Liver	Liver
32	chr7:138157600-138161400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
33	chr7:138157600-138161400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
34	chr7:138157600-138162400	Weak transcription	Fetal Lung	lung
35	chr7:138157600-138163400	Weak transcription	H9 Cell Line	embryonic stem cell
36	chr7:138157600-138163400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
37	chr7:138157600-138164200	Weak transcription	Pancreas	Pancrea
38	chr7:138157600-138191400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
39	chr7:138157800-138166800	Weak transcription	Right Atrium	heart
40	chr7:138158600-138160600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
41	chr7:138158800-138161600	Weak transcription	Cortex derived primary cultured neurospheres	brain
42	chr7:138159000-138160800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
43	chr7:138159200-138160600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
44	chr7:138159400-138163600	Enhancers	HUES48 Cell Line	embryonic stem cell
45	chr7:138159400-138165400	Enhancers	iPS-15b Cell Line	embryonic stem cell
46	chr7:138159800-138160400	Enhancers	Stomach Mucosa	stomach
47	chr7:138159800-138161400	Enhancers	HepG2	liver
48	chr7:138159800-138162400	Weak transcription	HUES64 Cell Line	embryonic stem cell
49	chr7:138159800-138163000	Weak transcription	Primary T cells from cord blood	blood
50	chr7:138159800-138163200	Weak transcription	Primary hematopoietic stem cells	blood

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