Variant report

Variant	rs34724405
Chromosome Location	chr19:42929941-42929942
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10451440	1.00[AMR][1000 genomes]
rs34147230	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs34348028	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs34433546	1.00[AMR][1000 genomes]
rs34874006	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35067200	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35073550	1.00[AMR][1000 genomes]
rs35091338	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35662484	1.00[AMR][1000 genomes]
rs35684151	1.00[AMR][1000 genomes]
rs35814374	1.00[AMR][1000 genomes]
rs36084626	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv522854	chr19:42120283-42931004	Weak transcription Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	104 gene(s)	inside rSNPs	diseases
2	nsv520239	chr19:42357455-42931004	Flanking Active TSS Enhancers Bivalent Enhancer Active TSS Strong transcription Genic enhancers Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	92 gene(s)	inside rSNPs	diseases
3	nsv911782	chr19:42514712-42931004	Bivalent/Poised TSS Enhancers Strong transcription Active TSS Flanking Active TSS Weak transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	71 gene(s)	inside rSNPs	diseases
4	nsv526186	chr19:42676481-43203507	Enhancers Bivalent Enhancer Genic enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	62 gene(s)	inside rSNPs	diseases
5	esv2422471	chr19:42733141-43669485	Genic enhancers Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	70 gene(s)	inside rSNPs	diseases
6	nsv911788	chr19:42887492-42930652	Enhancers Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Weak transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
7	nsv911794	chr19:42901430-42930652	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Active TSS Weak transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
8	nsv911795	chr19:42901430-42932699	Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Enhancers Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
9	nsv911798	chr19:42904653-42930652	Flanking Active TSS Enhancers Weak transcription Strong transcription Bivalent Enhancer Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
10	nsv911799	chr19:42905645-42930652	Weak transcription Strong transcription Enhancers Transcr. at gene 5' and 3' Genic enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
11	nsv911800	chr19:42906914-42930652	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
12	nsv911804	chr19:42916841-42932699	Weak transcription Bivalent Enhancer Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
13	nsv911808	chr19:42925636-42930652	Active TSS Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:42928400-42930000	Enhancers	Primary neutrophils fromperipheralblood	blood
2	chr19:42928400-42931000	Weak transcription	NHDF-Ad	bronchial
3	chr19:42928600-42931600	Weak transcription	Fetal Lung	lung
4	chr19:42928600-42936600	Weak transcription	Right Atrium	heart
5	chr19:42928600-42936800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr19:42928600-42937000	Weak transcription	Brain Substantia Nigra	brain
7	chr19:42928800-42930600	Weak transcription	Brain Anterior Caudate	brain
8	chr19:42928800-42930800	Weak transcription	Brain Cingulate Gyrus	brain
9	chr19:42928800-42930800	Weak transcription	Brain Inferior Temporal Lobe	brain
10	chr19:42928800-42931000	Weak transcription	Brain Hippocampus Middle	brain
11	chr19:42928800-42932600	Weak transcription	Brain Angular Gyrus	brain
12	chr19:42928800-42937200	Weak transcription	Lung	lung
13	chr19:42928800-42937400	Weak transcription	Stomach Mucosa	stomach
14	chr19:42928800-42937600	Weak transcription	Brain Germinal Matrix	brain
15	chr19:42928800-42937600	Weak transcription	Gastric	stomach
16	chr19:42928800-42944800	Weak transcription	Esophagus	oesophagus
17	chr19:42929000-42937600	Weak transcription	Placenta Amnion	Placenta Amnion
18	chr19:42929200-42930600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
19	chr19:42929200-42930600	Weak transcription	Left Ventricle	heart
20	chr19:42929200-42931000	Active TSS	Adipose Nuclei	Adipose
21	chr19:42929400-42931000	Weak transcription	Duodenum Smooth Muscle	Duodenum
22	chr19:42929400-42936600	Weak transcription	Right Ventricle	heart
23	chr19:42929400-42937000	Weak transcription	Fetal Intestine Small	intestine
24	chr19:42929400-42937400	Weak transcription	Spleen	Spleen
25	chr19:42929600-42930000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
26	chr19:42929600-42931000	Weak transcription	Fetal Intestine Large	intestine
27	chr19:42929600-42945200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
28	chr19:42929800-42930800	Weak transcription	Fetal Stomach	stomach
29	chr19:42929800-42931000	Weak transcription	Fetal Heart	heart

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