Variant report

Variant	rs34746912
Chromosome Location	chr3:118948845-118948846
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:118948409..118952425-chr3:118955700..118962526,10	K562	blood:
2	chr3:118948357..118951865-chr3:118958522..118961643,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000121578	Chromatin interaction

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs61744178	1.00[AMR][1000 genomes]
rs61744411	1.00[AMR][1000 genomes]
rs61747387	1.00[AMR][1000 genomes]
rs6766961	1.00[AMR][1000 genomes]
rs6778840	1.00[AMR][1000 genomes]
rs6778885	1.00[AMR][1000 genomes]
rs6781905	1.00[AMR][1000 genomes]
rs6782742	1.00[AMR][1000 genomes]
rs72655924	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72655931	1.00[AMR][1000 genomes]
rs72956724	1.00[AMR][1000 genomes]
rs72966441	1.00[AMR][1000 genomes]
rs72966442	1.00[AMR][1000 genomes]
rs72968480	1.00[AMR][1000 genomes]
rs72968490	1.00[AMR][1000 genomes]
rs72968497	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3487859	chr3:118570588-119419623	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
2	esv3487860	chr3:118570588-119419623	Strong transcription Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
3	esv18354	chr3:118855337-119000251	Enhancers Genic enhancers Strong transcription Flanking Active TSS Weak transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:118924400-118959000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr3:118927000-118952600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr3:118927000-118953800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr3:118927000-118953800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr3:118927200-118953800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr3:118927200-118955200	Strong transcription	Monocytes-CD14+_RO01746	blood
7	chr3:118927400-118950200	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
8	chr3:118927400-118953000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr3:118927600-118952400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
10	chr3:118927800-118956400	Strong transcription	iPS-20b Cell Line	embryonic stem cell
11	chr3:118928000-118955600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
12	chr3:118928200-118951000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr3:118928800-118950000	Strong transcription	Primary monocytes fromperipheralblood	blood
14	chr3:118929200-118956200	Strong transcription	HUES48 Cell Line	embryonic stem cell
15	chr3:118929200-118956200	Strong transcription	HUES64 Cell Line	embryonic stem cell
16	chr3:118929200-118956400	Strong transcription	H1 Cell Line	embryonic stem cell
17	chr3:118929200-118956600	Strong transcription	iPS-18 Cell Line	embryonic stem cell
18	chr3:118930000-118949800	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
19	chr3:118930000-118955400	Strong transcription	Primary B cells from peripheral blood	blood
20	chr3:118930200-118955800	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
21	chr3:118930200-118958400	Weak transcription	Hela-S3	cervix
22	chr3:118931600-118957400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
23	chr3:118932600-118955800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
24	chr3:118937200-118952600	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
25	chr3:118938400-118951200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
26	chr3:118940200-118950000	Strong transcription	Dnd41	blood
27	chr3:118940200-118950000	Strong transcription	GM12878-XiMat	blood
28	chr3:118941000-118953000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
29	chr3:118941800-118952400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr3:118942000-118949800	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
31	chr3:118944000-118949400	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
32	chr3:118944000-118952400	Strong transcription	NHDF-Ad	bronchial
33	chr3:118944000-118954800	Strong transcription	Fetal Stomach	stomach
34	chr3:118944200-118952200	Strong transcription	Fetal Muscle Trunk	muscle
35	chr3:118944400-118950200	Strong transcription	HMEC	breast
36	chr3:118944400-118954000	Strong transcription	Primary neutrophils fromperipheralblood	blood
37	chr3:118944400-118955800	Strong transcription	Placenta	Placenta
38	chr3:118944400-118956200	Strong transcription	HUES6 Cell Line	embryonic stem cell
39	chr3:118944600-118950400	Strong transcription	Fetal Thymus	thymus
40	chr3:118944600-118952600	Strong transcription	Duodenum Smooth Muscle	Duodenum
41	chr3:118944600-118952800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
42	chr3:118944800-118949000	Strong transcription	Brain Hippocampus Middle	brain
43	chr3:118944800-118949600	Strong transcription	iPS-15b Cell Line	embryonic stem cell
44	chr3:118944800-118949600	Strong transcription	Adipose Nuclei	Adipose
45	chr3:118944800-118950000	Strong transcription	Brain Anterior Caudate	brain
46	chr3:118944800-118950000	Strong transcription	Stomach Smooth Muscle	stomach
47	chr3:118944800-118950200	Strong transcription	Cortex derived primary cultured neurospheres	brain
48	chr3:118944800-118950600	Strong transcription	Fetal Muscle Leg	muscle
49	chr3:118944800-118951600	Strong transcription	Brain Angular Gyrus	brain
50	chr3:118944800-118952200	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links