Variant report

Variant	rs34758895
Chromosome Location	chr17:37925468-37925469
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr17:37924784..37926375-chr17:37969681..37972585,2	MCF-7	breast:
2	chr17:37919667..37922479-chr17:37925308..37929040,3	K562	blood:
3	chr17:37924711..37926315-chr17:37927219..37929986,2	MCF-7	breast:
4	chr17:37894301..37895918-chr17:37923821..37926664,2	MCF-7	breast:
5	chr17:37909376..37912567-chr17:37922952..37926689,4	MCF-7	breast:
6	chr17:37880907..37883423-chr17:37923415..37926251,2	MCF-7	breast:
7	chr17:37924386..37926386-chr17:37944226..37946350,2	MCF-7	breast:
8	chr17:37921292..37924332-chr17:37924754..37927862,3	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000265178	Chromatin interaction
ENSG00000141738	Chromatin interaction
ENSG00000264198	Chromatin interaction

Extended variants
information (count: 136 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:134)

rs_ID	r²[population]
rs12709364	0.92[EUR][1000 genomes]
rs12937330	0.92[EUR][1000 genomes]
rs12938117	0.92[EUR][1000 genomes]
rs12938617	0.89[EUR][1000 genomes]
rs12938749	0.92[EUR][1000 genomes]
rs12940616	0.92[EUR][1000 genomes]
rs12942660	0.92[EUR][1000 genomes]
rs12945253	0.92[EUR][1000 genomes]
rs12946040	0.92[EUR][1000 genomes]
rs12946188	0.92[EUR][1000 genomes]
rs12946792	0.92[EUR][1000 genomes]
rs12947480	0.92[EUR][1000 genomes]
rs12952146	0.92[EUR][1000 genomes]
rs13313561	0.92[EUR][1000 genomes]
rs13313564	0.92[EUR][1000 genomes]
rs13313573	0.92[EUR][1000 genomes]
rs13380871	0.92[EUR][1000 genomes]
rs1453560	0.89[EUR][1000 genomes]
rs1510475	0.92[EUR][1000 genomes]
rs16965367	0.92[EUR][1000 genomes]
rs2313429	0.92[EUR][1000 genomes]
rs28392589	0.92[EUR][1000 genomes]
rs28403951	0.92[EUR][1000 genomes]
rs28449671	0.92[EUR][1000 genomes]
rs28535471	0.92[EUR][1000 genomes]
rs28537796	0.92[EUR][1000 genomes]
rs28580691	0.92[EUR][1000 genomes]
rs28621669	0.92[EUR][1000 genomes]
rs28648398	0.92[EUR][1000 genomes]
rs28661421	0.92[EUR][1000 genomes]
rs28695941	0.92[EUR][1000 genomes]
rs28723017	0.92[EUR][1000 genomes]
rs28842324	0.92[EUR][1000 genomes]
rs28880017	0.92[EUR][1000 genomes]
rs28896477	0.92[EUR][1000 genomes]
rs2941509	0.92[EUR][1000 genomes]
rs34016964	0.92[EUR][1000 genomes]
rs34053394	0.92[EUR][1000 genomes]
rs34291217	0.92[EUR][1000 genomes]
rs34344462	0.92[EUR][1000 genomes]
rs34485135	0.92[EUR][1000 genomes]
rs34518282	0.92[EUR][1000 genomes]
rs34582264	0.81[EUR][1000 genomes]
rs34599546	0.92[EUR][1000 genomes]
rs34640000	0.92[EUR][1000 genomes]
rs34654193	0.92[EUR][1000 genomes]
rs34864615	0.89[EUR][1000 genomes]
rs34925681	0.92[EUR][1000 genomes]
rs34988504	0.92[EUR][1000 genomes]
rs35088469	0.92[EUR][1000 genomes]
rs35105110	0.92[EUR][1000 genomes]
rs35130019	0.89[EUR][1000 genomes]
rs35352075	0.92[EUR][1000 genomes]
rs35397078	0.81[EUR][1000 genomes]
rs35405174	0.92[EUR][1000 genomes]
rs35506518	0.92[EUR][1000 genomes]
rs35938199	0.92[EUR][1000 genomes]
rs36097841	0.92[EUR][1000 genomes]
rs4337325	0.92[EUR][1000 genomes]
rs4622539	0.92[EUR][1000 genomes]
rs56928975	0.89[EUR][1000 genomes]
rs58075375	0.92[EUR][1000 genomes]
rs66763967	0.92[EUR][1000 genomes]
rs67135646	0.92[EUR][1000 genomes]
rs67571561	0.92[EUR][1000 genomes]
rs67600807	0.92[EUR][1000 genomes]
rs67605703	0.92[EUR][1000 genomes]
rs71369788	0.92[EUR][1000 genomes]
rs71369791	0.92[EUR][1000 genomes]
rs71369792	0.92[EUR][1000 genomes]
rs7211998	0.92[EUR][1000 genomes]
rs7217133	0.92[EUR][1000 genomes]
rs7224641	0.92[EUR][1000 genomes]
rs73302152	0.92[EUR][1000 genomes]
rs73304123	0.92[EUR][1000 genomes]
rs7503018	0.92[EUR][1000 genomes]
rs8067523	0.92[EUR][1000 genomes]
rs8068125	0.92[EUR][1000 genomes]
rs8068894	0.92[EUR][1000 genomes]
rs8069531	0.92[EUR][1000 genomes]
rs8069893	0.92[EUR][1000 genomes]
rs8072612	0.92[EUR][1000 genomes]
rs8076347	0.92[EUR][1000 genomes]
rs8078409	0.81[EUR][1000 genomes]
rs8079075	0.92[EUR][1000 genomes]
rs9652838	0.89[EUR][1000 genomes]
rs9652840	0.92[EUR][1000 genomes]
rs9891131	0.95[AMR][1000 genomes]
rs9892781	0.92[EUR][1000 genomes]
rs9894370	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9894680	0.92[EUR][1000 genomes]
rs9894898	0.92[EUR][1000 genomes]
rs9898031	0.92[EUR][1000 genomes]
rs9898464	0.92[EUR][1000 genomes]
rs9899006	0.92[EUR][1000 genomes]
rs9899336	0.92[EUR][1000 genomes]
rs9899345	0.92[EUR][1000 genomes]
rs9900019	0.92[EUR][1000 genomes]
rs9900538	0.92[EUR][1000 genomes]
rs9900541	0.92[EUR][1000 genomes]
rs9901483	0.92[EUR][1000 genomes]
rs9901617	0.92[EUR][1000 genomes]
rs9901917	0.89[EUR][1000 genomes]
rs9902621	0.92[EUR][1000 genomes]
rs9904277	0.92[EUR][1000 genomes]
rs9904834	0.89[EUR][1000 genomes]
rs9905881	0.92[EUR][1000 genomes]
rs9907096	0.92[EUR][1000 genomes]
rs9907291	0.92[EUR][1000 genomes]
rs9907564	0.92[EUR][1000 genomes]
rs9907794	0.92[EUR][1000 genomes]
rs9907966	0.92[EUR][1000 genomes]
rs9907988	0.89[EUR][1000 genomes]
rs9908694	0.92[EUR][1000 genomes]
rs9908983	0.92[EUR][1000 genomes]
rs9909365	0.92[EUR][1000 genomes]
rs9909432	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9910678	0.95[AMR][1000 genomes]
rs9911069	0.92[EUR][1000 genomes]
rs9911634	0.92[EUR][1000 genomes]
rs9911669	0.92[EUR][1000 genomes]
rs9911688	0.92[EUR][1000 genomes]
rs9912095	0.92[EUR][1000 genomes]
rs9913044	0.89[EUR][1000 genomes]
rs9913596	0.92[EUR][1000 genomes]
rs9913769	0.92[EUR][1000 genomes]
rs9913795	0.92[EUR][1000 genomes]
rs9913957	0.92[EUR][1000 genomes]
rs9914302	0.92[EUR][1000 genomes]
rs9914665	0.92[EUR][1000 genomes]
rs9914757	0.89[EUR][1000 genomes]
rs9915509	0.92[EUR][1000 genomes]
rs9915797	0.85[EUR][1000 genomes]
rs9916259	0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1064787	chr17:37892843-38054410	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
2	nsv543342	chr17:37892843-38054410	Active TSS Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:37912000-37930400	Weak transcription	Esophagus	oesophagus
2	chr17:37912800-37927400	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr17:37913600-37926400	Genic enhancers	Fetal Thymus	thymus
4	chr17:37915800-37926000	Genic enhancers	Primary T cells fromperipheralblood	blood
5	chr17:37917000-37925800	Genic enhancers	Thymus	Thymus
6	chr17:37918400-37929400	Weak transcription	Colonic Mucosa	Colon
7	chr17:37919200-37926000	Genic enhancers	Primary T killer memory cells from peripheral blood	blood
8	chr17:37920000-37930000	Genic enhancers	Primary Natural Killer cells fromperipheralblood	blood
9	chr17:37920800-37931000	Genic enhancers	Primary B cells from peripheral blood	blood
10	chr17:37921000-37926600	Genic enhancers	Primary T helper cells fromperipheralblood	blood
11	chr17:37921200-37926200	Genic enhancers	Primary T helper cells PMA-I stimulated	--
12	chr17:37922200-37925800	Genic enhancers	Primary T helper 17 cells PMA-I stimulated	--
13	chr17:37922200-37926800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
14	chr17:37922600-37926200	Genic enhancers	Primary T helper memory cells from peripheral blood 1	blood
15	chr17:37922600-37928400	Weak transcription	Rectal Mucosa Donor 29	rectum
16	chr17:37922800-37926200	Genic enhancers	Primary T cells from cord blood	blood
17	chr17:37922800-37926600	Genic enhancers	Primary T regulatory cells fromperipheralblood	blood
18	chr17:37923000-37928600	Genic enhancers	Primary B cells from cord blood	blood
19	chr17:37923200-37929200	Weak transcription	Spleen	Spleen
20	chr17:37924200-37928600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
21	chr17:37924400-37929000	Transcr. at gene 5' and 3'	GM12878-XiMat	blood
22	chr17:37924600-37929600	Enhancers	Duodenum Mucosa	Duodenum
23	chr17:37924800-37925800	Genic enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
24	chr17:37925000-37926000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
25	chr17:37925200-37925600	Bivalent Enhancer	HepG2	liver
26	chr17:37925400-37925600	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
27	chr17:37925400-37925600	Bivalent Enhancer	Foreskin Keratinocyte Primary Cells skin03	Skin
28	chr17:37925400-37925600	Enhancers	Pancreas	Pancrea
29	chr17:37925400-37925600	Bivalent Enhancer	HMEC	breast
30	chr17:37925400-37925800	Bivalent Enhancer	NHEK	skin
31	chr17:37925400-37926200	Genic enhancers	Primary T killer naive cells fromperipheralblood	blood
32	chr17:37925400-37926400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
33	chr17:37925400-37927600	Enhancers	Hela-S3	cervix
34	chr17:37925400-37929600	Enhancers	Dnd41	blood

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