Variant report
| Variant | rs34785063 |
|---|---|
| Chromosome Location | chr13:96316014-96316015 |
| allele | A/C |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr13:96315925..96317996-chr13:96327867..96330110,2 | K562 | blood: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000247400 | Chromatin interaction |
| ENSG00000102580 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:8)
| rs_ID | r2[population] |
|---|---|
| rs12871482 | 1.00[AMR][1000 genomes] |
| rs34211586 | 1.00[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs34695030 | 1.00[AFR][1000 genomes];0.87[EUR][1000 genomes] |
| rs35496261 | 1.00[AFR][1000 genomes];0.87[EUR][1000 genomes] |
| rs35782001 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs61973050 | 1.00[AFR][1000 genomes] |
| rs61975169 | 1.00[AFR][1000 genomes] |
| rs71433099 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv900934 | chr13:96255706-96327574 | Strong transcription Flanking Active TSS Bivalent/Poised TSS Enhancers Weak transcription Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
