Variant report

Variant	rs34789097
Chromosome Location	chr7:104991241-104991242
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:104985604..104988009-chr7:104988661..104992551,3	MCF-7	breast:

Extended variants
information (count: 100 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:87)

rs_ID	r²[population]
rs10224564	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10228503	0.97[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10230128	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10230449	0.86[AFR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10233695	0.82[AFR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10235252	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10240574	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10248422	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10248954	0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10249170	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10252295	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10253496	0.87[ASN][1000 genomes]
rs10255779	0.89[AFR][1000 genomes];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10258841	0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10259721	0.97[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10261613	0.94[AMR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10261738	0.87[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs10261782	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10267633	0.86[ASN][1000 genomes]
rs10272634	0.91[AFR][1000 genomes];0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10276153	0.99[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10280336	0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10953473	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11764361	0.82[ASN][1000 genomes]
rs11769318	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11769936	0.91[AFR][1000 genomes];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11973742	0.94[EUR][1000 genomes]
rs11973780	0.95[EUR][1000 genomes]
rs12537761	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12666949	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12669532	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12705305	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13223001	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13237370	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13246886	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17721991	0.84[AFR][1000 genomes];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs17778396	0.84[AFR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1917047	0.91[AFR][1000 genomes];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1978201	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2040913	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2237611	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2237615	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2237616	0.81[AFR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2237618	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2237619	0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2237620	0.82[AFR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2286124	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2299312	0.81[AFR][1000 genomes];0.80[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2299313	0.81[AFR][1000 genomes];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2299314	0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2299316	0.95[EUR][1000 genomes]
rs2299320	0.95[EUR][1000 genomes]
rs2299325	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2299326	0.84[AFR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2385542	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2385556	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28461911	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs28823350	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34003298	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs34154773	0.97[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34717863	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35442357	0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs35973577	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs35993922	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3735372	0.86[AFR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3779208	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3779209	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3801283	0.83[AFR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4610671	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4727622	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4730078	0.99[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs55796396	0.93[EUR][1000 genomes]
rs60446665	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs62488069	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6971241	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs717352	0.83[AFR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs725506	0.83[AFR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73186027	0.83[AFR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73188303	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs73188305	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73188321	0.83[ASN][1000 genomes]
rs7808168	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs8180735	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs8180737	0.88[AFR][1000 genomes];0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9641343	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9641347	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9641348	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34588	chr7:104737612-105153242	Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
2	esv2757233	chr7:104758250-105208492	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
3	esv2759549	chr7:104758250-105208492	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
4	nsv8196	chr7:104763559-105155978	Enhancers Weak transcription Active TSS Strong transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
5	esv34580	chr7:104763580-105153242	Enhancers Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
6	esv2758127	chr7:104766707-105110581	Enhancers Strong transcription Active TSS Flanking Active TSS Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
7	nsv1028228	chr7:104807207-105182998	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
8	nsv932138	chr7:104826194-105152816	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
9	nsv1015688	chr7:104849770-105182998	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
10	nsv1029832	chr7:104905057-105112489	Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
11	nsv1023767	chr7:104931143-105190662	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
12	nsv539049	chr7:104931143-105190662	Flanking Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
13	nsv1034689	chr7:104950564-105085879	Bivalent/Poised TSS Active TSS Weak transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:79 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:104962800-104992600	Weak transcription	Fetal Intestine Small	intestine
2	chr7:104973200-104998800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr7:104976800-104991600	Weak transcription	HSMM	muscle
4	chr7:104980200-104991600	Weak transcription	HUVEC	blood vessel
5	chr7:104980400-104991400	Weak transcription	Spleen	Spleen
6	chr7:104980800-104992200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
7	chr7:104983000-104994000	Enhancers	Primary B cells from peripheral blood	blood
8	chr7:104983200-104992400	Enhancers	Primary T helper cells fromperipheralblood	blood
9	chr7:104983800-104992600	Weak transcription	HUES6 Cell Line	embryonic stem cell
10	chr7:104984000-104999200	Weak transcription	H9 Cell Line	embryonic stem cell
11	chr7:104984600-104996800	Enhancers	Primary T cells fromperipheralblood	blood
12	chr7:104984800-104991800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
13	chr7:104984800-104992400	Enhancers	Primary T helper cells PMA-I stimulated	--
14	chr7:104985600-104992400	Weak transcription	Small Intestine	intestine
15	chr7:104986600-104991400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr7:104986600-104991600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
17	chr7:104986600-104992600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
18	chr7:104986600-104992600	Weak transcription	Brain Angular Gyrus	brain
19	chr7:104986800-104991400	Weak transcription	Rectal Smooth Muscle	rectum
20	chr7:104986800-104992400	Weak transcription	Cortex derived primary cultured neurospheres	brain
21	chr7:104986800-104992600	Weak transcription	HUES64 Cell Line	embryonic stem cell
22	chr7:104987000-104991400	Weak transcription	Colon Smooth Muscle	Colon
23	chr7:104987000-104991600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
24	chr7:104987000-104992600	Weak transcription	H1 Cell Line	embryonic stem cell
25	chr7:104987200-104991800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
26	chr7:104987200-104992600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
27	chr7:104987200-104992600	Weak transcription	Pancreas	Pancrea
28	chr7:104987400-104992600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
29	chr7:104987400-104994000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
30	chr7:104987600-104992000	Enhancers	Primary B cells from cord blood	blood
31	chr7:104987600-104992600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
32	chr7:104987800-104991400	Weak transcription	Thymus	Thymus
33	chr7:104987800-104991600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
34	chr7:104987800-104991600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
35	chr7:104987800-104992000	Weak transcription	Lung	lung
36	chr7:104987800-104992600	Weak transcription	Left Ventricle	heart
37	chr7:104988000-104991400	Weak transcription	Gastric	stomach
38	chr7:104988000-104991600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
39	chr7:104988000-104991600	Weak transcription	Placenta	Placenta
40	chr7:104988000-104992600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
41	chr7:104988000-104993800	Weak transcription	Right Atrium	heart
42	chr7:104988200-104991400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
43	chr7:104988200-104991400	Weak transcription	GM12878-XiMat	blood
44	chr7:104988200-104992800	Weak transcription	Fetal Heart	heart
45	chr7:104989600-104991400	Weak transcription	Sigmoid Colon	Sigmoid Colon
46	chr7:104989800-104992400	Enhancers	Primary T helper naive cells from peripheral blood	blood
47	chr7:104990000-104991400	Weak transcription	Brain Anterior Caudate	brain
48	chr7:104990000-104991600	Enhancers	HepG2	liver
49	chr7:104990000-104991800	Enhancers	Primary T regulatory cells fromperipheralblood	blood
50	chr7:104990000-104992200	Enhancers	Primary T cells from cord blood	blood

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