Variant report

Variant	rs34791772
Chromosome Location	chr18:24349295-24349296
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11659904	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11659906	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11661270	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11663064	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12954845	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12965167	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17611328	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs34047317	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs34315959	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs34909051	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs35601155	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs66522730	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs67918306	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2761995	chr18:24214286-24502570	Bivalent Enhancer Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:24347400-24354000	Weak transcription	Monocytes-CD14+_RO01746	blood
2	chr18:24348400-24352000	Weak transcription	Pancreatic Islets	Pancreatic Islet

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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