Variant report

Variant	rs34804364
Chromosome Location	chr4:143766530-143766531
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:143764792..143768376-chr4:144104488..144107848,3	MCF-7	breast:
2	chr4:143392966..143400087-chr4:143764739..143770446,12	MCF-7	breast:
3	chr4:143470482..143472862-chr4:143765653..143767436,2	MCF-7	breast:
4	chr4:143391120..143394953-chr4:143764140..143771077,8	MCF-7	breast:

Variant related genes	Relation type
ENSG00000250326	Chromatin interaction
ENSG00000170185	Chromatin interaction
ENSG00000109452	Chromatin interaction

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs10023146	0.93[ASN][1000 genomes]
rs10029622	0.91[EUR][1000 genomes]
rs10034956	0.93[ASN][1000 genomes]
rs10049507	0.93[ASN][1000 genomes]
rs11100756	0.93[ASN][1000 genomes]
rs11725795	0.93[ASN][1000 genomes]
rs13103261	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13105531	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13108947	0.80[ASN][1000 genomes]
rs13112871	0.93[ASN][1000 genomes]
rs13116732	0.93[ASN][1000 genomes]
rs13132001	0.91[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs13133396	0.93[ASN][1000 genomes]
rs13135210	0.80[ASN][1000 genomes]
rs13140998	0.80[ASN][1000 genomes]
rs1373664	0.93[ASN][1000 genomes]
rs1441412	1.00[ASN][1000 genomes]
rs1441416	0.93[ASN][1000 genomes]
rs1899564	0.93[ASN][1000 genomes]
rs2322814	0.93[ASN][1000 genomes]
rs28367408	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28410519	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28421948	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28453834	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28462985	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28508323	0.93[ASN][1000 genomes]
rs28533753	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28608029	0.93[ASN][1000 genomes]
rs28665985	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28667040	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28685292	0.93[ASN][1000 genomes]
rs28715653	0.91[EUR][1000 genomes]
rs34032529	0.93[ASN][1000 genomes]
rs34241470	0.93[ASN][1000 genomes]
rs34412123	0.93[ASN][1000 genomes]
rs35053070	0.80[ASN][1000 genomes]
rs35416729	0.93[ASN][1000 genomes]
rs35838997	0.93[ASN][1000 genomes]
rs35918867	0.93[ASN][1000 genomes]
rs36042265	0.93[ASN][1000 genomes]
rs62331921	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62331922	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62331933	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62331934	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7662067	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7683763	0.91[EUR][1000 genomes]
rs986081	0.93[ASN][1000 genomes]
rs9994268	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv880174	chr4:143639498-143848024	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:87 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:143764400-143766800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr4:143764800-143768800	Active TSS	Stomach Smooth Muscle	stomach
3	chr4:143765200-143766600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr4:143765200-143766800	Enhancers	Primary T killer memory cells from peripheral blood	blood
5	chr4:143765400-143766800	Flanking Active TSS	Dnd41	blood
6	chr4:143765400-143768400	Active TSS	Aorta	Aorta
7	chr4:143765600-143766600	Active TSS	Duodenum Smooth Muscle	Duodenum
8	chr4:143765600-143766600	Enhancers	NHDF-Ad	bronchial
9	chr4:143765600-143767000	Active TSS	Brain Anterior Caudate	brain
10	chr4:143765600-143768000	Active TSS	Right Ventricle	heart
11	chr4:143765600-143768600	Active TSS	Brain Angular Gyrus	brain
12	chr4:143765800-143766600	Active TSS	Rectal Smooth Muscle	rectum
13	chr4:143765800-143766600	Enhancers	Hela-S3	cervix
14	chr4:143765800-143767400	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr4:143765800-143767800	Active TSS	Rectal Mucosa Donor 29	rectum
16	chr4:143765800-143768200	Active TSS	Brain Inferior Temporal Lobe	brain
17	chr4:143766000-143766600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr4:143766000-143766800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
19	chr4:143766000-143766800	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
20	chr4:143766000-143768600	Active TSS	A549	lung
21	chr4:143766200-143766600	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
22	chr4:143766200-143766600	Enhancers	Muscle Satellite Cultured Cells	--
23	chr4:143766200-143766600	Bivalent Enhancer	Fetal Lung	lung
24	chr4:143766200-143766800	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
25	chr4:143766200-143766800	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin03	Skin
26	chr4:143766200-143767000	Bivalent Enhancer	Primary B cells from peripheral blood	blood
27	chr4:143766200-143768200	Active TSS	Ovary	ovary
28	chr4:143766200-143768400	Active TSS	Fetal Heart	heart
29	chr4:143766200-143768400	Active TSS	Right Atrium	heart
30	chr4:143766200-143768600	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
31	chr4:143766200-143768600	Active TSS	Left Ventricle	heart
32	chr4:143766200-143768800	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
33	chr4:143766200-143768800	Active TSS	Pancreatic Islets	Pancreatic Islet
34	chr4:143766400-143766600	Flanking Bivalent TSS/Enh	H9 Derived Neuron Cultured Cells	ES cell derived
35	chr4:143766400-143766600	Flanking Bivalent TSS/Enh	HUES48 Cell Line	embryonic stem cell
36	chr4:143766400-143766600	Flanking Bivalent TSS/Enh	iPS-20b Cell Line	embryonic stem cell
37	chr4:143766400-143766600	Bivalent Enhancer	iPS DF 19.11 Cell Line	embryonic stem cell
38	chr4:143766400-143766600	Bivalent Enhancer	Primary monocytes fromperipheralblood	blood
39	chr4:143766400-143766600	Active TSS	Primary B cells from cord blood	blood
40	chr4:143766400-143766600	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
41	chr4:143766400-143766600	Flanking Bivalent TSS/Enh	Primary T helper 17 cells PMA-I stimulated	--
42	chr4:143766400-143766600	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
43	chr4:143766400-143766600	Bivalent Enhancer	Primary T killer naive cells fromperipheralblood	blood
44	chr4:143766400-143766600	Bivalent Enhancer	Cortex derived primary cultured neurospheres	brain
45	chr4:143766400-143766600	Bivalent Enhancer	Primary mononuclear cells fromperipheralblood	Blood
46	chr4:143766400-143766600	Flanking Bivalent TSS/Enh	Brain Hippocampus Middle	brain
47	chr4:143766400-143766600	Flanking Bivalent TSS/Enh	Brain Dorsolateral Prefrontal Cortex	brain
48	chr4:143766400-143766600	Flanking Active TSS	Colonic Mucosa	Colon
49	chr4:143766400-143766600	Flanking Active TSS	Colon Smooth Muscle	Colon
50	chr4:143766400-143766600	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland

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