Variant report
| Variant | rs34804693 |
|---|---|
| Chromosome Location | chr6:133541981-133541982 |
| allele | A/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:33)
| rs_ID | r2[population] |
|---|---|
| rs11154720 | 0.83[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs13194374 | 1.00[ASN][1000 genomes] |
| rs13212740 | 1.00[ASN][1000 genomes] |
| rs13218103 | 1.00[ASN][1000 genomes] |
| rs13218570 | 1.00[ASN][1000 genomes] |
| rs17062322 | 1.00[ASN][1000 genomes] |
| rs17062356 | 1.00[ASN][1000 genomes] |
| rs17242354 | 1.00[ASN][1000 genomes] |
| rs34018528 | 1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs34304122 | 0.95[EUR][1000 genomes] |
| rs34353709 | 1.00[ASN][1000 genomes] |
| rs34395775 | 1.00[ASN][1000 genomes] |
| rs34585135 | 1.00[ASN][1000 genomes] |
| rs34895585 | 0.83[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs35350600 | 1.00[ASN][1000 genomes] |
| rs35677071 | 1.00[ASN][1000 genomes] |
| rs58707513 | 0.83[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6569875 | 1.00[ASN][1000 genomes] |
| rs66480937 | 1.00[ASN][1000 genomes] |
| rs67684955 | 1.00[ASN][1000 genomes] |
| rs6923945 | 1.00[ASN][1000 genomes] |
| rs6926046 | 1.00[ASN][1000 genomes] |
| rs6940715 | 0.83[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs71574647 | 1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs71574648 | 0.89[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs71574649 | 0.83[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs72991903 | 1.00[ASN][1000 genomes] |
| rs72991923 | 1.00[ASN][1000 genomes] |
| rs72993984 | 1.00[ASN][1000 genomes] |
| rs72993996 | 1.00[ASN][1000 genomes] |
| rs7747163 | 1.00[ASN][1000 genomes] |
| rs7747638 | 1.00[ASN][1000 genomes] |
| rs9493599 | 1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv2758080 | chr6:133444719-133627364 | Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| 2 | esv2759470 | chr6:133444719-133627364 | Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Genic enhancers Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| 3 | nsv470862 | chr6:133492507-133600402 | Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats Bivalent/Poised TSS Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Strong transcription Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr6:133541400-133542000 | Enhancers | iPS-18 Cell Line | embryonic stem cell |
| 2 | chr6:133541600-133542000 | Enhancers | iPS-20b Cell Line | embryonic stem cell |
| 3 | chr6:133541600-133542000 | Enhancers | Cortex derived primary cultured neurospheres | brain |
