Variant report

Variant	rs34822820
Chromosome Location	chr1:215245588-215245589
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs12126969	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12134532	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12134808	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12137544	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12138417	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12145594	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12146036	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs17024310	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1901624	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1947364	0.82[EUR][1000 genomes]
rs2363553	0.85[EUR][1000 genomes]
rs34804996	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs60350537	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6703032	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv468105	chr1:215167236-215248417	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv549182	chr1:215167236-215248417	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	esv2754411	chr1:215235605-215281605	Bivalent/Poised TSS Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Weak transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:215229400-215253000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr1:215231600-215247600	Weak transcription	NHDF-Ad	bronchial

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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