Variant report

Variant	rs34834368
Chromosome Location	chr4:81833683-81833684
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs1027294	0.81[EUR][1000 genomes]
rs11099448	0.81[EUR][1000 genomes]
rs12233641	0.81[EUR][1000 genomes]
rs12233814	0.81[EUR][1000 genomes]
rs13113167	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13116671	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13119650	0.81[EUR][1000 genomes]
rs17005004	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34144094	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34620960	0.81[EUR][1000 genomes]
rs34747140	0.89[EUR][1000 genomes]
rs34851603	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36087364	0.81[EUR][1000 genomes]
rs71596042	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7673771	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv517072	chr4:81793825-81890350	Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	esv2763370	chr4:81800466-81866997	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv999729	chr4:81802554-82627820	Genic enhancers Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
4	nsv537156	chr4:81802554-82627820	Flanking Active TSS Strong transcription Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:81833600-81833800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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