Variant report

Variant	rs34870149
Chromosome Location	chr2:55616287-55616288
allele	-/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:55615003..55618126-chr2:55622970..55626824,3	K562	blood:

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv874156	chr2:55474026-55636351	Strong transcription Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	nsv874158	chr2:55513738-55619923	Enhancers Flanking Active TSS Strong transcription Weak transcription Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv874159	chr2:55513738-55636351	Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv1006170	chr2:55530179-55809251	Strong transcription Weak transcription Bivalent/Poised TSS Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
5	nsv524437	chr2:55615366-55619923	Weak transcription ZNF genes & repeats Strong transcription Enhancers Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:60 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:55510200-55616800	Weak transcription	Fetal Intestine Small	intestine
2	chr2:55542400-55644800	Weak transcription	Primary T cells from cord blood	blood
3	chr2:55555200-55635800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr2:55579200-55640800	Weak transcription	Fetal Brain Male	brain
5	chr2:55579400-55622400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr2:55579400-55644400	Weak transcription	Primary B cells from cord blood	blood
7	chr2:55579600-55632200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr2:55582000-55632400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr2:55589400-55639400	Weak transcription	Aorta	Aorta
10	chr2:55589600-55628800	Weak transcription	Fetal Thymus	thymus
11	chr2:55589600-55632200	Weak transcription	HUES6 Cell Line	embryonic stem cell
12	chr2:55590400-55622400	Weak transcription	GM12878-XiMat	blood
13	chr2:55591000-55646000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
14	chr2:55592000-55635400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr2:55592200-55617600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
16	chr2:55592200-55631800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr2:55592800-55617800	Weak transcription	A549	lung
18	chr2:55592800-55626600	Weak transcription	Muscle Satellite Cultured Cells	--
19	chr2:55592800-55635600	Weak transcription	HSMMtube	muscle
20	chr2:55593000-55622400	Weak transcription	Brain Angular Gyrus	brain
21	chr2:55593000-55622400	Weak transcription	Brain Anterior Caudate	brain
22	chr2:55593200-55632600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
23	chr2:55593400-55616400	Weak transcription	HUVEC	blood vessel
24	chr2:55593800-55631800	Weak transcription	Brain Germinal Matrix	brain
25	chr2:55599200-55626800	Weak transcription	Osteobl	bone
26	chr2:55600000-55617600	Weak transcription	Fetal Muscle Leg	muscle
27	chr2:55600600-55617400	Weak transcription	K562	blood
28	chr2:55600600-55617800	Weak transcription	Fetal Lung	lung
29	chr2:55600600-55631600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
30	chr2:55600800-55629400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
31	chr2:55600800-55629400	Weak transcription	HUES64 Cell Line	embryonic stem cell
32	chr2:55601800-55631000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
33	chr2:55601800-55644600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
34	chr2:55602000-55618600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
35	chr2:55602000-55629600	Weak transcription	HUES48 Cell Line	embryonic stem cell
36	chr2:55602200-55629600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
37	chr2:55602400-55617200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
38	chr2:55602400-55629600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
39	chr2:55603600-55629400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
40	chr2:55603600-55630200	Weak transcription	NH-A	brain
41	chr2:55605800-55617800	Weak transcription	HepG2	liver
42	chr2:55606200-55630400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
43	chr2:55607400-55617600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
44	chr2:55608600-55630400	Weak transcription	HSMM	muscle
45	chr2:55609000-55618800	Weak transcription	Primary hematopoietic stem cells	blood
46	chr2:55609400-55617800	Weak transcription	Brain Cingulate Gyrus	brain
47	chr2:55609800-55617800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
48	chr2:55612600-55629600	Weak transcription	Dnd41	blood
49	chr2:55612600-55630200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
50	chr2:55612800-55632000	Weak transcription	Fetal Stomach	stomach

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