Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10939838	0.82[EUR][1000 genomes]
rs10939839	0.86[EUR][1000 genomes]
rs11743928	0.86[EUR][1000 genomes]
rs11745887	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13157125	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13186687	1.00[ASN][1000 genomes]
rs34072532	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4513649	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6860925	1.00[ASN][1000 genomes]
rs6868695	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6868850	0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6879253	1.00[ASN][1000 genomes]
rs6882049	1.00[ASN][1000 genomes]
rs6889130	1.00[ASN][1000 genomes]
rs6889641	0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71627997	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73106785	1.00[ASN][1000 genomes]
rs7700547	1.00[ASN][1000 genomes]
rs7708284	1.00[ASN][1000 genomes]
rs7709269	0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1025856	chr5:59188419-59928852	Enhancers Strong transcription Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	nsv830316	chr5:59480269-59689829	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv4847	chr5:59523591-59569307	Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:59558600-59563600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr5:59559600-59563400	Weak transcription	Primary monocytes fromperipheralblood	blood
3	chr5:59559600-59563600	Weak transcription	Monocytes-CD14+_RO01746	blood
4	chr5:59559600-59584800	Weak transcription	Primary B cells from cord blood	blood
5	chr5:59560800-59562600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr5:59561600-59576600	Weak transcription	Placenta Amnion	Placenta Amnion
7	chr5:59562000-59565800	Weak transcription	Gastric	stomach
8	chr5:59562400-59565600	Weak transcription	Primary neutrophils fromperipheralblood	blood

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