Variant report

Variant	rs34888770
Chromosome Location	chr4:96559347-96559348
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10006511	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10013217	0.83[ASN][1000 genomes]
rs10015906	0.83[ASN][1000 genomes]
rs10016846	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10016927	0.95[AMR][1000 genomes];0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10022798	0.97[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10025352	0.83[ASN][1000 genomes]
rs12506817	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12510917	0.95[AMR][1000 genomes];0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12644144	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12646265	0.82[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs13106700	0.96[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13129220	0.83[ASN][1000 genomes]
rs13131332	0.96[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1436590	0.83[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs1436591	0.87[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs1436594	0.97[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1865852	0.83[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs28432792	0.95[AMR][1000 genomes];0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs28480454	0.82[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs28522563	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2865708	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs34735998	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs35128711	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35163600	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs35988502	0.83[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs4699269	0.83[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs5011717	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57688009	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs66961649	0.83[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs750915	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7659302	0.93[AMR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7674945	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7680957	0.93[AMR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7681580	0.83[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs7682279	0.83[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs7697432	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7697645	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9884214	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9990668	0.83[ASN][1000 genomes]
rs9990964	0.83[ASN][1000 genomes]
rs9992379	0.94[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs9994273	0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830012	chr4:96547783-96746163	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	esv1844506	chr4:96554889-96704333	Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv1007133	chr4:96556072-96614235	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:96550400-96560000	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr4:96558200-96561600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr4:96558400-96561800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr4:96558600-96559600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr4:96558600-96559800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr4:96558600-96559800	Weak transcription	Brain Cingulate Gyrus	brain
7	chr4:96558600-96560000	Weak transcription	Brain Substantia Nigra	brain
8	chr4:96558600-96560200	Weak transcription	Brain Anterior Caudate	brain
9	chr4:96558600-96560200	Weak transcription	Brain Inferior Temporal Lobe	brain
10	chr4:96558600-96560400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr4:96558600-96561600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
12	chr4:96558600-96561800	Weak transcription	HUES48 Cell Line	embryonic stem cell
13	chr4:96558600-96561800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
14	chr4:96558600-96561800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
15	chr4:96558800-96560000	Weak transcription	HMEC	breast
16	chr4:96559200-96559800	Enhancers	Dnd41	blood

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