Variant report

Variant	rs34893617
Chromosome Location	chr10:25672297-25672298
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:25670945..25672971-chr10:25675542..25677889,2	K562	blood:
2	chr10:25667594..25669629-chr10:25671940..25673892,2	MCF-7	breast:

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs12770371	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12777013	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12778704	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12778817	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34165837	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34207877	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34393723	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34427293	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34573334	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34740599	0.82[AMR][1000 genomes]
rs34784889	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34823294	1.00[ASN][1000 genomes]
rs35173442	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35257646	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35316012	1.00[ASN][1000 genomes]
rs35361058	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35677024	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35677680	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35709145	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35850110	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35898125	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35989426	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36035509	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59342106	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61195869	1.00[ASN][1000 genomes]
rs61261208	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61401625	0.82[ASN][1000 genomes]
rs71495430	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71495431	1.00[ASN][1000 genomes]
rs71495432	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71495433	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71495434	0.90[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71495435	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71495436	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71495437	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71495438	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs71495439	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs71495452	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74123869	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74123870	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74123871	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74123872	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74123875	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74124007	0.92[ASN][1000 genomes]
rs74126023	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74126025	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2761583	chr10:25525657-25722444	Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	esv3349863	chr10:25614571-25946379	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	esv3342880	chr10:25644995-25682820	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv550226	chr10:25653017-25693426	ZNF genes & repeats Enhancers Strong transcription Weak transcription Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:25670000-25673200	Enhancers	Cortex derived primary cultured neurospheres	brain
2	chr10:25670200-25673400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr10:25670800-25672600	Enhancers	iPS-18 Cell Line	embryonic stem cell
4	chr10:25671000-25677000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr10:25671400-25672400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr10:25671400-25672400	Weak transcription	HUES64 Cell Line	embryonic stem cell
7	chr10:25671800-25673000	Enhancers	H1 Cell Line	embryonic stem cell
8	chr10:25672000-25673000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
9	chr10:25672200-25672800	Enhancers	HUES48 Cell Line	embryonic stem cell
10	chr10:25672200-25673000	Enhancers	iPS-15b Cell Line	embryonic stem cell

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