Variant report

Variant	rs34896479
Chromosome Location	chr5:118241534-118241535
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs13170553	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882767	chr5:117931730-118385691	Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Enhancers Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
2	nsv882773	chr5:118175640-118241854	Weak transcription Enhancers ZNF genes & repeats Strong transcription Genic enhancers Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv599563	chr5:118191798-118241854	Weak transcription Strong transcription ZNF genes & repeats Enhancers Active TSS Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:118216600-118244800	Weak transcription	Primary T cells from cord blood	blood
2	chr5:118225000-118247000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr5:118225400-118300400	Weak transcription	Primary B cells from cord blood	blood
4	chr5:118227400-118270600	Weak transcription	Ovary	ovary
5	chr5:118233400-118259000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr5:118233800-118289200	Weak transcription	Psoas Muscle	Psoas
7	chr5:118239400-118242400	Weak transcription	Pancreatic Islets	Pancreatic Islet
8	chr5:118239400-118257000	Weak transcription	Fetal Lung	lung
9	chr5:118240400-118241800	Enhancers	HUES48 Cell Line	embryonic stem cell
10	chr5:118240800-118242000	Enhancers	HUES64 Cell Line	embryonic stem cell
11	chr5:118241000-118241800	Enhancers	ES-I3 Cell Line	embryonic stem cell
12	chr5:118241000-118242000	Enhancers	iPS-15b Cell Line	embryonic stem cell
13	chr5:118241000-118242200	Enhancers	iPS-18 Cell Line	embryonic stem cell
14	chr5:118241000-118245000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
15	chr5:118241200-118248400	Weak transcription	HUES6 Cell Line	embryonic stem cell
16	chr5:118241200-118248600	Weak transcription	Fetal Heart	heart

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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