Variant report

Variant	rs34899283
Chromosome Location	chr7:6774535-6774536
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:6768428..6771621-chr7:6773707..6775724,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000187953	Chromatin interaction

Extended variants
information (count: 68 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs10236353	0.85[ASN][1000 genomes]
rs10244591	0.93[ASN][1000 genomes]
rs10263771	0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10272921	0.92[ASN][1000 genomes]
rs10441131	0.92[ASN][1000 genomes]
rs10951994	0.93[ASN][1000 genomes]
rs12113879	0.90[ASN][1000 genomes]
rs12533770	0.88[AMR][1000 genomes]
rs12534591	0.87[ASN][1000 genomes]
rs12535850	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12536067	0.91[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs12536107	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12537487	0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12539942	0.82[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs12540797	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13229571	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs13247186	0.97[ASN][1000 genomes]
rs2462654	0.85[ASN][1000 genomes]
rs28494902	0.96[ASN][1000 genomes]
rs28649084	0.87[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs34857592	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs34947632	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs35121012	0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs35291651	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35644498	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35768299	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4724766	0.84[ASN][1000 genomes]
rs62439703	0.80[ASN][1000 genomes]
rs62439704	0.80[ASN][1000 genomes]
rs62439719	0.80[ASN][1000 genomes]
rs62439721	0.81[ASN][1000 genomes]
rs62439722	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62439727	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs62439728	0.90[ASN][1000 genomes]
rs62439731	0.89[ASN][1000 genomes]
rs62439734	0.85[EUR][1000 genomes]
rs62439737	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62439738	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62439743	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6463579	0.89[ASN][1000 genomes]
rs6463580	0.89[ASN][1000 genomes]
rs6954172	0.89[ASN][1000 genomes]
rs6975002	0.80[ASN][1000 genomes]
rs6979127	0.80[ASN][1000 genomes]
rs7779296	0.93[ASN][1000 genomes]
rs7784521	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7789640	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7792579	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7792858	0.91[ASN][1000 genomes]
rs7796846	0.98[ASN][1000 genomes]
rs7804542	0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:17 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1015277	chr7:6705439-7303195	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
2	nsv887439	chr7:6736332-6791749	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
3	nsv1015646	chr7:6738483-6779270	Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
4	nsv887440	chr7:6743097-6820508	Weak transcription Genic enhancers Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
5	nsv887441	chr7:6744957-6919214	Active TSS Strong transcription Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
6	esv1819001	chr7:6746810-6785602	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
7	nsv966754	chr7:6750289-6838266	Active TSS Strong transcription Weak transcription Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
8	nsv887442	chr7:6753286-6820508	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
9	nsv887443	chr7:6753286-6832265	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
10	nsv887444	chr7:6753286-6855510	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
11	nsv887445	chr7:6758018-6843722	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
12	nsv887446	chr7:6758018-6870635	Flanking Active TSS Active TSS Weak transcription Strong transcription Enhancers Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
13	nsv887447	chr7:6764583-6843722	Active TSS Weak transcription Flanking Active TSS Strong transcription Enhancers Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
14	nsv887448	chr7:6764583-6855510	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
15	nsv887449	chr7:6764583-6870635	Strong transcription Weak transcription Flanking Active TSS Active TSS Enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
16	esv2757207	chr7:6764583-6977214	Weak transcription Flanking Active TSS Strong transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
17	esv2759504	chr7:6764583-6977214	Flanking Active TSS Enhancers Active TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:6770000-6783400	Weak transcription	Aorta	Aorta
2	chr7:6770200-6775600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
3	chr7:6770200-6779000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr7:6770200-6779200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr7:6770200-6782600	Weak transcription	Small Intestine	intestine
6	chr7:6770400-6776800	Weak transcription	Pancreas	Pancrea
7	chr7:6770400-6777000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr7:6770400-6778400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr7:6770400-6784800	Weak transcription	NHLF	lung
10	chr7:6770800-6774800	Weak transcription	Fetal Kidney	kidney
11	chr7:6770800-6776000	Weak transcription	Colon Smooth Muscle	Colon
12	chr7:6770800-6776800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
13	chr7:6770800-6777800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr7:6770800-6786400	Weak transcription	Fetal Brain Male	brain
15	chr7:6771000-6774800	Weak transcription	Psoas Muscle	Psoas
16	chr7:6771000-6774800	Weak transcription	HMEC	breast
17	chr7:6771000-6775000	Weak transcription	Pancreatic Islets	Pancreatic Islet
18	chr7:6771000-6776800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
19	chr7:6771000-6776800	Weak transcription	NHDF-Ad	bronchial
20	chr7:6771000-6778200	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
21	chr7:6771000-6778800	Weak transcription	Brain Hippocampus Middle	brain
22	chr7:6771000-6782000	Strong transcription	Fetal Stomach	stomach
23	chr7:6771000-6786200	Weak transcription	HUVEC	blood vessel
24	chr7:6771000-6786400	Weak transcription	Primary B cells from cord blood	blood
25	chr7:6771200-6775400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
26	chr7:6771200-6776000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
27	chr7:6771200-6776800	Weak transcription	Colonic Mucosa	Colon
28	chr7:6771200-6778600	Weak transcription	Fetal Heart	heart
29	chr7:6771200-6780200	Weak transcription	Right Atrium	heart
30	chr7:6771200-6781400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
31	chr7:6771200-6792400	Weak transcription	NHEK	skin
32	chr7:6771400-6774600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
33	chr7:6771400-6776600	Weak transcription	Brain Germinal Matrix	brain
34	chr7:6771400-6777600	Strong transcription	Dnd41	blood
35	chr7:6771600-6781800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
36	chr7:6771800-6780400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
37	chr7:6771800-6783400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
38	chr7:6772000-6776200	Strong transcription	Duodenum Smooth Muscle	Duodenum
39	chr7:6772000-6776800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
40	chr7:6772000-6777200	Strong transcription	Duodenum Mucosa	Duodenum
41	chr7:6772000-6777200	Strong transcription	HSMM	muscle
42	chr7:6772000-6777400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
43	chr7:6772000-6777400	Strong transcription	Primary T cells from cord blood	blood
44	chr7:6772000-6777400	Strong transcription	Primary T helper cells fromperipheralblood	blood
45	chr7:6772000-6777400	Strong transcription	Brain Anterior Caudate	brain
46	chr7:6772000-6777400	Strong transcription	Placenta Amnion	Placenta Amnion
47	chr7:6772000-6777400	Strong transcription	Skeletal Muscle Female	skeletal muscle
48	chr7:6772000-6777400	Strong transcription	Stomach Smooth Muscle	stomach
49	chr7:6772000-6777400	Strong transcription	Thymus	Thymus
50	chr7:6772000-6777400	Strong transcription	A549	lung

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