Variant report

Variant	rs34909051
Chromosome Location	chr18:24359117-24359118
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr18:24236248..24238343-chr18:24357858..24360427,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000134504	Chromatin interaction

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs11659207	1.00[AFR][1000 genomes]
rs11659904	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11659906	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11661270	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11663064	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12954845	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12965167	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12970160	1.00[AFR][1000 genomes]
rs17611328	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs17684326	1.00[AFR][1000 genomes]
rs34047317	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs34315959	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs34775621	1.00[AFR][1000 genomes]
rs34791772	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs35531875	1.00[AFR][1000 genomes]
rs35601155	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs66522730	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs66950491	1.00[AFR][1000 genomes]
rs66985226	1.00[AFR][1000 genomes]
rs67384004	1.00[AFR][1000 genomes]
rs67918306	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs71352701	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2761995	chr18:24214286-24502570	Bivalent Enhancer Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:24351800-24360400	Weak transcription	Dnd41	blood
2	chr18:24356600-24361000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr18:24356800-24359200	Enhancers	iPS-20b Cell Line	embryonic stem cell
4	chr18:24357600-24360200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr18:24357800-24359600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr18:24357800-24360000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr18:24357800-24360400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
8	chr18:24357800-24360400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr18:24358000-24360400	Weak transcription	H1 Cell Line	embryonic stem cell
10	chr18:24358000-24360400	Weak transcription	Primary monocytes fromperipheralblood	blood
11	chr18:24358200-24359400	Weak transcription	HUES48 Cell Line	embryonic stem cell
12	chr18:24358200-24360400	Weak transcription	Monocytes-CD14+_RO01746	blood
13	chr18:24358400-24361200	Enhancers	iPS-18 Cell Line	embryonic stem cell
14	chr18:24358600-24360600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr18:24358800-24360400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
16	chr18:24358800-24361200	Enhancers	HUES64 Cell Line	embryonic stem cell
17	chr18:24359000-24360400	Weak transcription	HUES6 Cell Line	embryonic stem cell
18	chr18:24359000-24360600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
19	chr18:24359000-24360800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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