Variant report

Variant	rs34921598
Chromosome Location	chr11:57078025-57078026
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:57051990..57054187-chr11:57076546..57078465,2	MCF-7	breast:
2	chr11:57060644..57063333-chr11:57076469..57078304,2	K562	blood:
3	chr11:57075786..57078161-chr11:57083290..57085004,2	MCF-7	breast:

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs7120078	1.00[AMR][1000 genomes]
rs7128178	1.00[AMR][1000 genomes]
rs7129780	1.00[AMR][1000 genomes]
rs7130847	1.00[AMR][1000 genomes]
rs7932705	1.00[AMR][1000 genomes]
rs7943508	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv915640	chr11:56814841-57139786	Weak transcription Transcr. at gene 5' and 3' Enhancers Genic enhancers Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
2	nsv1044030	chr11:57073395-58035564	Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Strong transcription Enhancers Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	136 gene(s)	inside rSNPs	diseases
3	nsv541047	chr11:57073395-58035564	Active TSS Enhancers Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	136 gene(s)	inside rSNPs	diseases
4	nsv541048	chr11:57076815-57120781	Flanking Active TSS Genic enhancers Active TSS Weak transcription Enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:119 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:57052400-57078200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr11:57067200-57078400	Weak transcription	Primary T helper cells fromperipheralblood	blood
3	chr11:57067400-57078400	Weak transcription	Primary B cells from peripheral blood	blood
4	chr11:57067400-57079000	Weak transcription	Primary B cells from cord blood	blood
5	chr11:57067600-57078400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
6	chr11:57067800-57078400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr11:57068400-57078400	Weak transcription	Primary hematopoietic stem cells	blood
8	chr11:57068400-57081600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr11:57068800-57078200	Weak transcription	Primary T cells fromperipheralblood	blood
10	chr11:57068800-57078200	Weak transcription	Fetal Brain Male	brain
11	chr11:57069600-57078400	Weak transcription	Primary T helper cells PMA-I stimulated	--
12	chr11:57069800-57078200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr11:57069800-57078600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
14	chr11:57069800-57078600	Weak transcription	Pancreatic Islets	Pancreatic Islet
15	chr11:57070000-57078200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
16	chr11:57070000-57078400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
17	chr11:57070000-57078600	Weak transcription	Primary T cells from cord blood	blood
18	chr11:57070200-57078200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr11:57070200-57078400	Genic enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
20	chr11:57070200-57078600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
21	chr11:57072000-57078200	Strong transcription	Fetal Brain Female	brain
22	chr11:57072200-57078200	Genic enhancers	Stomach Smooth Muscle	stomach
23	chr11:57072400-57078200	Strong transcription	iPS-20b Cell Line	embryonic stem cell
24	chr11:57072800-57078200	Strong transcription	HUES48 Cell Line	embryonic stem cell
25	chr11:57073800-57078600	Transcr. at gene 5' and 3'	Muscle Satellite Cultured Cells	--
26	chr11:57073800-57078600	Transcr. at gene 5' and 3'	HSMM	muscle
27	chr11:57074000-57078200	Genic enhancers	Fetal Adrenal Gland	Adrenal Gland
28	chr11:57074000-57078200	Genic enhancers	Gastric	stomach
29	chr11:57074400-57081800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
30	chr11:57074600-57078200	Transcr. at gene 5' and 3'	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
31	chr11:57074600-57078200	Genic enhancers	Colonic Mucosa	Colon
32	chr11:57074600-57078200	Genic enhancers	Placenta	Placenta
33	chr11:57074600-57078400	Genic enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
34	chr11:57074800-57078200	Genic enhancers	Left Ventricle	heart
35	chr11:57075000-57078200	Weak transcription	Primary monocytes fromperipheralblood	blood
36	chr11:57075000-57078200	Genic enhancers	Esophagus	oesophagus
37	chr11:57075000-57078200	Weak transcription	Monocytes-CD14+_RO01746	blood
38	chr11:57075000-57078400	Weak transcription	GM12878-XiMat	blood
39	chr11:57075000-57080600	Genic enhancers	Spleen	Spleen
40	chr11:57075200-57078200	Strong transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
41	chr11:57075200-57078200	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
42	chr11:57075600-57078200	Enhancers	Right Atrium	heart
43	chr11:57075800-57078200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
44	chr11:57076000-57078800	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
45	chr11:57076200-57078200	Genic enhancers	Right Ventricle	heart
46	chr11:57076200-57078400	Genic enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
47	chr11:57076200-57080600	Transcr. at gene 5' and 3'	Foreskin Fibroblast Primary Cells skin01	Skin
48	chr11:57076400-57078400	Transcr. at gene 5' and 3'	Breast Myoepithelial Primary Cells	Breast
49	chr11:57076600-57078200	Genic enhancers	Fetal Stomach	stomach
50	chr11:57076600-57078400	Transcr. at gene 5' and 3'	Skeletal Muscle Male	skeletal muscle

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