Variant report

Variant	rs34924380
Chromosome Location	chr3:46558154-46558155
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs12486039	0.87[ASN][1000 genomes]
rs2176861	0.93[ASN][1000 genomes]
rs4682820	0.91[AFR][1000 genomes];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62247799	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6772937	0.93[ASN][1000 genomes]
rs6800163	0.93[ASN][1000 genomes]
rs6808142	0.87[ASN][1000 genomes]
rs9311391	0.93[ASN][1000 genomes]
rs9810340	0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013306	chr3:46469014-46698538	Weak transcription Enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:46541000-46580200	Weak transcription	Fetal Heart	heart
2	chr3:46541200-46562200	Weak transcription	Right Ventricle	heart
3	chr3:46544800-46599400	Weak transcription	Right Atrium	heart
4	chr3:46545600-46559200	Weak transcription	Skeletal Muscle Male	skeletal muscle
5	chr3:46549200-46585400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr3:46549400-46579000	Weak transcription	HUES6 Cell Line	embryonic stem cell
7	chr3:46549600-46578600	Weak transcription	H1 Cell Line	embryonic stem cell
8	chr3:46555000-46567800	Weak transcription	Fetal Muscle Leg	muscle
9	chr3:46555400-46561800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr3:46556400-46591000	Weak transcription	Psoas Muscle	Psoas
11	chr3:46556800-46560800	Weak transcription	Ovary	ovary
12	chr3:46557200-46559600	Enhancers	Muscle Satellite Cultured Cells	--
13	chr3:46557200-46559800	Enhancers	HMEC	breast
14	chr3:46557400-46559600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr3:46557400-46559600	Enhancers	HUVEC	blood vessel
16	chr3:46557600-46558400	Enhancers	Spleen	Spleen
17	chr3:46557600-46558600	Enhancers	K562	blood
18	chr3:46557600-46559600	Strong transcription	Left Ventricle	heart
19	chr3:46557600-46559800	Enhancers	NHEK	skin
20	chr3:46557800-46558600	Enhancers	A549	lung
21	chr3:46557800-46559400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr3:46557800-46559400	Enhancers	NH-A	brain
23	chr3:46557800-46559600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
24	chr3:46557800-46559600	Enhancers	NHDF-Ad	bronchial
25	chr3:46557800-46559800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
26	chr3:46557800-46560600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
27	chr3:46557800-46578400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
28	chr3:46558000-46558400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
29	chr3:46558000-46558400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
30	chr3:46558000-46558800	Flanking Active TSS	Hela-S3	cervix
31	chr3:46558000-46559000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
32	chr3:46558000-46559200	Enhancers	Osteobl	bone
33	chr3:46558000-46559400	Enhancers	HSMMtube	muscle
34	chr3:46558000-46559600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
35	chr3:46558000-46559600	Enhancers	HSMM	muscle
36	chr3:46558000-46559800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
37	chr3:46558000-46571400	Strong transcription	Skeletal Muscle Female	skeletal muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links